Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01419 ATGTTGAAATCTTGCTCATCCAACAACAAGAACAACAAAAAGGCATCCTCAAGAAAGGGTTGTATGAGAGGAAAAGGAGGCCCTGAAAATGCTTTATGTACTTTTAAAGGTGTTCGTCAAAGAACTTGGGGCAAATGGGTTGCTGAAATTCGAGAACCAAATCGTGGTGCTCGACTTTGGCTTGGTACTTTTGATACTTCCCATGATGCTGCTTTAGCTTATGACAATGCTGCTCGTCGTCTTTATGGCTCTGATGCTAAACTCAATCTCCCTCTAATTTCTTCTTCTATTTCTGTTTCTGTGTCTTCTTCATCTTCTTCTACTACTACTTCTGATAATAATAATAACAACAGTGTTGTTGCTACTGCTAATACTTATAATAATAATGTCAATCCTATGGTGGAAGATGTTGCTTCTTCATCCTCTCTCTCTAATAACAAGAGATTTAGGGAGGATGAAGAGGAACAAATTGGAGGGCTCTGGAGAGCTATGAGTATTAGTTTAGATGATTCCATTTGGGTTGAAGCAGCTATGTCTTTGGATTTTCCACTTATGGAACAGCAAACCTTTTTTTCTCCTAATTTGGTTGATGTCATAATATTTCATACAAAAGTTGATTGTATATTGCAAATGGGGTTTCTGATAACTGATTCTTTTCTTTCAGTATCAGACTTTTCAGTTCTGTTTTTATTTGGTTCTGTGATTTATTTGTACTTTCTCCAAATCAGATGGAGGGAAAAAAAAGAAAAGAAAAAAAGAGGAGAATCTGCCAAATGGACACCACCCCAAATCACATCCCAAAGGAACTTAATTAATTAG 819 36.51 MLKSCSSNNKNNKKASSRKGCMRGKGGPENALCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAALAYDNAARRLYGSDAKLNLPLISSSISVSVSSSSSSTTTSDNNNNNSVVATANTYNNNVNPMVEDVASSSSLSNNKRFREDEEEQIGGLWRAMSISLDDSIWVEAAMSLDFPLMEQQTFFSPNLVDVIIFHTKVDCILQMGFLITDSFLSVSDFSVLFLFGSVIYLYFLQIRWREKKEKKKRGESAKWTPPQITSQRNLIN* 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16921001 16921819 - Chy3G063990.1 Chy03g01419 223580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01419 272 SUPERFAMILY DNA-binding domain 34 91 IPR016177 GO:0003677
Chy03g01419 272 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Chy03g01419 272 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 9 189 - -
Chy03g01419 272 MobiDBLite consensus disorder prediction 1 15 - -
Chy03g01419 272 Pfam AP2 domain 34 83 IPR001471 GO:0003700|GO:0006355
Chy03g01419 272 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Chy03g01419 272 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 9 189 - -
Chy03g01419 272 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Chy03g01419 272 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Chy03g01419 272 Gene3D AP2/ERF domain 34 93 IPR036955 GO:0003700|GO:0006355
Chy03g01419 272 CDD AP2 33 91 IPR001471 GO:0003700|GO:0006355
Chy03g01419 272 MobiDBLite consensus disorder prediction 1 23 - -
Chy03g01419 272 MobiDBLite consensus disorder prediction 253 272 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy03g01419 Chy04g00464 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01419 Chy-Chr3:16921001 Chy02g00711 Chy-Chr2:4301477 8.91E-22 dispersed
Chy04g01742 Chy-Chr4:23786687 Chy03g01419 Chy-Chr3:16921001 1.55E-31 transposed
Chy08g00608 Chy-Chr8:13894298 Chy03g01419 Chy-Chr3:16921001 2.50E-31 transposed
Chy03g01419 Chy-Chr3:16921001 Chy04g00464 Chy-Chr4:4323257 9.59E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17737 PF00847 AP2 9.20E-14 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01419 - - csv:101213875 301.212