Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01420 ATGGGCAACTTCGCCTTCCATTTTCTGACTCTCTTTCTCCTTCTTTTTCGACTTCTTTCTGCTACTTCGAATGTTTCGGAGCTTTTCGAAATCTGGTGTACAGAGCATGGGAAGTCGTATTCCTCCGCCGAAGAAAAGCTCTACAGACTCGGTGTGTTTGCCGATAACTATGAATTTGTTACCCATCACAACAATTTGGACAATTCTTCTTATACCCTTTCTTTAAATTCTTATGCTGATCTCACCCACCATGAGTTTAAGGTCTCTCGCTTGGGTTTTTCCCCTGCTTTGCGGAACTTCCGGCCGGTTCTGCCGCAAGAACCCTCTCGTCCACGGGATGTTCCTGATTCGTTAGATTGGAGGAAGAAAGGGGCGGTGACTGCTGTTAAGGATCAAGGAAGCTGTGGCGCTTGTTGGTCTTTCTCAGCTACAGGAGCCATGGAAGGGATCAACCAGATTATGACAGGGTCTCTTATTAGTCTCTCTGAACAAGAATTAATTGATTGTGACAGATCTTATAATTCTGGCTGTGGAGGAGGATTGATGGATTATGCATACCAATTTGTGATCAGTAACCATGGGATTGACACCGAGAATGATTATCCTTATCAAGCTCGTGATGGATCATGTCGTAAGGACAAGGGTGCTCATTTGAGACCCTTAGGGATAGGAAAAGATTGCTTGCTGACTTCCATTTTATGTTTATTGAGCTTGCAGCTGCAGAGGAATGTTGTTACCATTGATGGCTATACCGATATTCCTTCAAATGATGAAGGAAAATTACTGCAAGCAGTAGCAGCTCAACCTGTGAGTGTTGGCATATGTGGCAGTGAGAGAGCCTTTCAATTATACTCAAAGGGAATTTTCTCCGGTCCGTGTTCAACTTCTTTGGATCATGCTGTGTTGATTGTAGGATATGGATCAGAAAATGGAGTTGATTATTGGATTGTGAAGAACTCATGGGGTAAAAGTTGGGGAATGGATGGTTACATGCACATGCAGCGCAACAGTGGCAATTCGGAAGGCGTTTGTGGAATCAACAAACTTGCTTCATATCCAACTAAAACAAATCCTAACCCTCCTCCATCCCCTCCTCCAGGTCCAACAAAATGTAGTATTCTTACTAGCTGTGCTGCTGGAGAAACATGTTGTTGTGCAAAGAAATTCCTTGGCCTTTGTTTATCATGGAAATGCTGTGGATTGAGCTCTGCCGTATGTTGCAAGGATGGTCGTCATTGTTGCCCCTTTGATTATCCCATTTGTGATACTGACAGGAACCTATGCCTCAAGCGAACGATGAACGGTACACGAACAGAAATACTTGAGAATAGGAGTTCTTCTGGATCATCTGGTACTTGGAGCTCTTTCTAA 1371 43.69 MGNFAFHFLTLFLLLFRLLSATSNVSELFEIWCTEHGKSYSSAEEKLYRLGVFADNYEFVTHHNNLDNSSYTLSLNSYADLTHHEFKVSRLGFSPALRNFRPVLPQEPSRPRDVPDSLDWRKKGAVTAVKDQGSCGACWSFSATGAMEGINQIMTGSLISLSEQELIDCDRSYNSGCGGGLMDYAYQFVISNHGIDTENDYPYQARDGSCRKDKGAHLRPLGIGKDCLLTSILCLLSLQLQRNVVTIDGYTDIPSNDEGKLLQAVAAQPVSVGICGSERAFQLYSKGIFSGPCSTSLDHAVLIVGYGSENGVDYWIVKNSWGKSWGMDGYMHMQRNSGNSEGVCGINKLASYPTKTNPNPPPSPPPGPTKCSILTSCAAGETCCCAKKFLGLCLSWKCCGLSSAVCCKDGRHCCPFDYPICDTDRNLCLKRTMNGTRTEILENRSSSGSSGTWSSF* 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16926396 16929663 + Chy3G064000.1 Chy03g01420 223581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01420 456 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 314 333 IPR025661 -
Chy03g01420 456 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 15 387 - -
Chy03g01420 456 PANTHER OS05G0508300 PROTEIN 15 387 - -
Chy03g01420 456 SMART Inhibitor_I29_2 29 86 IPR013201 -
Chy03g01420 456 Gene3D Cysteine proteinases 17 356 - -
Chy03g01420 456 Pfam Cathepsin propeptide inhibitor domain (I29) 29 86 IPR013201 -
Chy03g01420 456 SMART pept_c1 114 354 IPR000668 GO:0006508|GO:0008234
Chy03g01420 456 SUPERFAMILY Granulin repeat 368 401 - -
Chy03g01420 456 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 132 143 IPR000169 -
Chy03g01420 456 SMART GRAN_2 371 428 IPR000118 -
Chy03g01420 456 PRINTS Papain cysteine protease (C1) family signature 299 309 IPR000668 GO:0006508|GO:0008234
Chy03g01420 456 PRINTS Papain cysteine protease (C1) family signature 314 320 IPR000668 GO:0006508|GO:0008234
Chy03g01420 456 PRINTS Papain cysteine protease (C1) family signature 132 147 IPR000668 GO:0006508|GO:0008234
Chy03g01420 456 CDD Peptidase_C1A 115 352 IPR039417 -
Chy03g01420 456 SUPERFAMILY Cysteine proteinases 25 354 IPR038765 -
Chy03g01420 456 Pfam Papain family cysteine protease 114 353 IPR000668 GO:0006508|GO:0008234
Chy03g01420 456 Gene3D Granulin 368 431 IPR037277 -
Chy03g01420 456 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 297 307 IPR025660 -
Chy03g01420 456 Pfam Granulin 382 429 IPR000118 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01420 - - - csv:101211052 814.298
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00894 Chy-Chr2:5765745 Chy03g01420 Chy-Chr3:16926396 1.95E-109 dispersed
Chy03g01420 Chy-Chr3:16926396 Chy07g00156 Chy-Chr7:1328055 1.18E-126 dispersed
Chy03g01414 Chy-Chr3:16881624 Chy03g01420 Chy-Chr3:16926396 4.00E-53 proximal
Chy03g01420 Chy-Chr3:16926396 Chy03g01421 Chy-Chr3:16932781 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1019 . . . . . . . . . Cmo12g00389 . . . Car12g00414 Sed05g2303 . Cpe07g00393 Bhi04g00211 Tan02g0772 Cmetu01g1870 . Hepe02g0484 . . Cla08g01454 Cam08g1939 Cec08g1513 Cco08g1652 Clacu08g1629 . Cre08g1415 . . . . . . . Cme03g01917 . Blo18g00796 . . . . . . . . . Cma12g00438 . . . . . . . . . . . . . . . . . . . Lsi08g01359 Csa02g02095 Chy03g01420 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011861 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01420 Chy_Chr03 FPKM 5.274014 5.096409 4.597009 6.801822 9.131996 10.080023 8.565721 9.700244 9.301467 9.579177