Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01421 ATGGGAAACTTCATCTTCCATTTTCTTACTCTCTTTCTCCTTCTCTTTCGACCTCTTTCTGCTACTTCGAATGTTTCGGAGCTTTTCGAAATCTGGTGTACAGAGCATGGAAAATCGTATTCCTCCGCCGAAGCAAAGCTCTACAGGCTCAGTGTGTTTGCCGATAACTATGAATTTGTTACCCATCACAACAATTTGGGCAATTCTTCTTATACCCTTTCTCTAAATTCTTATGCTGATCTTACCCACCATGAGTTTAAGGTCTCTCGCTTGGGTTTTTCCCCTGCTTTGCCGAACTACCGGCCGGTTCTGCCGCAAGAACCCTCTCTTCCACGGGATGTCCCTGATTCGGTAGATTGGAGGAAGAAAGGGGCGGTGACTGCTGTTAAGGATCAAGGAAGCTGTGGCGCTTGTTGGTCTTTCTCGGCTACAGGAGCCATGGAAGGGATCAACCAGATTATGACAGGGTCTCTTATTAGTCTCTCTGAACAGGAATTAATTGATTGTGACAAATCTTACAATTTGGGCTGCAGAGGAGGATCGATGGCTCGTGCATACCAATTTGTGATCAGTAACCATGGGATTGACACCGAGGATGATTATCCTTATCAAGGTCGTGATGGATTGTGTCGTAAGGACAAGCTGAAGAGGAATGTTGTTACCATTGATGGTTATACTTATATTCCTTCAAATGATGAGGGAAAATTACTGCAAGCAGTAGCAGCTCAACCTGTGAGTGTTAGCATATGTGGCAGTGATAGAGCCTTTCAGTTATACTCAAAGGGAATTTTCTCCGGTCCGTGTTCAACTTCTTTGGATCATGGTGTGTTGATCGTAGGATATGGCTCAGAAAATGGAGTTGATTATTGGATTGTGAAGAACTCATGGGGTAGAAGTTGGGGAATGGATGGTTACATGCACATGCAGCGCAACAGCGGCAATGCAGAAGGCCTTTGTGGAATTAACAAGCTTGCTTCATATCCAACTAAAACAAATCCTAACCCTCCTCCAGGTCCAACAAAATGTAGTGCTATTACTAGTTGTGGTGTTGGGGAAACCTGTTGTTGTGCAAAGAAATTCTTTGACCTTTGTTTATCATGGAAATGCTGTGCATTGAGCGCTGCAGTATGTTGCAAGGATGGTAGTTATTGTTGCCCCCTTGATTATCCCATTTGTGATAATGACAGGAACCAATGCCTCAAGCGAACGATGAACGGTACACAAACAGAAGTACTTGAGAATAGGAGTTCTTCTGTATCTGCGTGGACTTTTTTGCGAAGAACACAGATTCTTGTTAGAATATCAATGGCTGAAGAAGGGCAAGTGATTGGAATTCACAATGTTAAGGAATTCGACGAGCAAGTACGCATAGGAAAGGAAGCGAGAAAAGTGATTGTGGTGGATTTTACTGCTTCTTGGTGTCCACCATGCCGCTTCATAGCTCCAATATTCGCAGAGTTGGCTAAGAAGAATCCCCATGCCATTTTCCTGAAAGTGGACGTTGATGAAGTTCAACCAATTGCTGTGAGGTTCAACGTTGAAGCAATGCCGACCTTTGCTTTCGTGAGAGATGAGGTGGAAGTTAGCTCTCACAGGATCGTCGGTGCTGACAAAAATGGGCTGATGGAAAAGGTAATTGAGTTGTGCGGTCCAGTTCCATCAACCTCTACTGCATAA 1677 44.07 MGNFIFHFLTLFLLLFRPLSATSNVSELFEIWCTEHGKSYSSAEAKLYRLSVFADNYEFVTHHNNLGNSSYTLSLNSYADLTHHEFKVSRLGFSPALPNYRPVLPQEPSLPRDVPDSVDWRKKGAVTAVKDQGSCGACWSFSATGAMEGINQIMTGSLISLSEQELIDCDKSYNLGCRGGSMARAYQFVISNHGIDTEDDYPYQGRDGLCRKDKLKRNVVTIDGYTYIPSNDEGKLLQAVAAQPVSVSICGSDRAFQLYSKGIFSGPCSTSLDHGVLIVGYGSENGVDYWIVKNSWGRSWGMDGYMHMQRNSGNAEGLCGINKLASYPTKTNPNPPPGPTKCSAITSCGVGETCCCAKKFFDLCLSWKCCALSAAVCCKDGSYCCPLDYPICDNDRNQCLKRTMNGTQTEVLENRSSSVSAWTFLRRTQILVRISMAEEGQVIGIHNVKEFDEQVRIGKEARKVIVVDFTASWCPPCRFIAPIFAELAKKNPHAIFLKVDVDEVQPIAVRFNVEAMPTFAFVRDEVEVSSHRIVGADKNGLMEKVIELCGPVPSTSTA* 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16932781 16939673 + Chy3G064010.1 Chy03g01421 223582

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01421 558 PANTHER OS05G0508300 PROTEIN 15 364 - -
Chy03g01421 558 Gene3D Granulin 340 410 IPR037277 -
Chy03g01421 558 Gene3D Cysteine proteinases 17 331 - -
Chy03g01421 558 SUPERFAMILY Granulin repeat 339 372 - -
Chy03g01421 558 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 132 143 IPR000169 -
Chy03g01421 558 Pfam Granulin 353 400 IPR000118 -
Chy03g01421 558 ProSiteProfiles Thioredoxin domain profile. 423 558 IPR013766 -
Chy03g01421 558 ProSitePatterns Thioredoxin family active site. 466 484 IPR017937 -
Chy03g01421 558 SMART pept_c1 114 329 IPR000668 GO:0006508|GO:0008234
Chy03g01421 558 SMART Inhibitor_I29_2 29 86 IPR013201 -
Chy03g01421 558 Pfam Thioredoxin 446 543 IPR013766 -
Chy03g01421 558 CDD TRX_family 449 547 - -
Chy03g01421 558 Pfam Papain family cysteine protease 114 328 IPR000668 GO:0006508|GO:0008234
Chy03g01421 558 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 272 282 IPR025660 -
Chy03g01421 558 Gene3D Glutaredoxin 432 551 - -
Chy03g01421 558 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 15 364 - -
Chy03g01421 558 SMART GRAN_2 342 399 IPR000118 -
Chy03g01421 558 Pfam Cathepsin propeptide inhibitor domain (I29) 29 86 IPR013201 -
Chy03g01421 558 CDD Peptidase_C1A 115 327 IPR039417 -
Chy03g01421 558 SUPERFAMILY Cysteine proteinases 25 329 IPR038765 -
Chy03g01421 558 PRINTS Papain cysteine protease (C1) family signature 132 147 IPR000668 GO:0006508|GO:0008234
Chy03g01421 558 PRINTS Papain cysteine protease (C1) family signature 289 295 IPR000668 GO:0006508|GO:0008234
Chy03g01421 558 PRINTS Papain cysteine protease (C1) family signature 274 284 IPR000668 GO:0006508|GO:0008234
Chy03g01421 558 SUPERFAMILY Thioredoxin-like 438 549 IPR036249 -
Chy03g01421 558 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 289 308 IPR025661 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01421 - - - csv:101211052 779.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01421 Chy-Chr3:16932781 Chy07g00156 Chy-Chr7:1328055 7.20E-125 dispersed
Chy03g01420 Chy-Chr3:16926396 Chy03g01421 Chy-Chr3:16932781 0 tandem
Chy03g01421 Chy-Chr3:16932781 Chy03g01422 Chy-Chr3:16942747 1.51E-60 tandem
Chy02g00605 Chy-Chr2:3678380 Chy03g01421 Chy-Chr3:16932781 1.74E-29 wgd
Chy03g01421 Chy-Chr3:16932781 Chy04g00470 Chy-Chr4:4387568 9.16E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1017 . . . . . . . . Cmo05g00278 . Cma01g01935 Cma09g00130 Car01g01512 . . Cpe06g00089 . Bhi04g00210 . . . Hepe10g0603 . . Cla08g01455 Cam08g1940 Cec08g1514 Cco08g1653 Clacu08g1630 . Cre08g1416 Cone4ag1941 . . Cone20ag0114 Lsi04g01706 Csa03g04245 . Cme03g01918 . . . Bda01g01515 Bpe02g01711 . Bma01g00744 . . Cmo01g01998 Cmo09g00127 . Cma05g00273 Car05g00226 Car09g00116 Cpe11g00226 Cpe02g00101 . . . . . . . Cla05g01907 Cam05g2044 Cec05g2053 Cco05g2107 Clacu05g2036 Cmu05g1915 Cre05g2037 Lsi08g01361 Csa02g02094 Chy03g01421 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011861 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01421 Chy_Chr03 FPKM 0.837662 1.365421 2.138901 2.407604 4.527028 5.543592 3.730726 4.155684 4.789821 4.380901