Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01423 ATGGTAGTAAAACGACGAAAGAGTGGGCAATTTGGTAAAAATGGAAGAACCGGAGCCCACCCTGACTATAAATATCATCCCATCGCATCATCTCTCTGCATTGTTGCAGTTTTTGATACGGAGAATAATATATTAGCAGAAAAGCTATTTGCGTTCAAACCAATGGGTGAAGAAGGTCAAGTTATTGCATGCCATAAGCAATCTGAATGGGAAGCTCTATTGGCTAAAGCTAAGGAATCTGGAAAATTGGTTGTGGTGGATTTTACTGCTTCCTGGTGCGGTCCATGCCGTACAATTGCTCCATATTTCTCCGAATTGGCTAAGAATCATTCCGGTGTTGTGTTCATTAAAGTGGACGTCGATGAATTGAATGCTATAGCTAGCGAGTGGAAGATTACTGCAATGCCGACGTTTGTTTTCGTGAAAGGAGGGGAAACAGTTCACAAGATTGTTGGTGCTGATAGAGCGGCACTGTTGAAGAAAATAGAAGAGCTTAAAACTTCAACAACAGCTGCTGCTACTTCTACTACTTAG 534 41.76 MVVKRRKSGQFGKNGRTGAHPDYKYHPIASSLCIVAVFDTENNILAEKLFAFKPMGEEGQVIACHKQSEWEALLAKAKESGKLVVVDFTASWCGPCRTIAPYFSELAKNHSGVVFIKVDVDELNAIASEWKITAMPTFVFVKGGETVHKIVGADRAALLKKIEELKTSTTAAATSTT* 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16946761 16947836 + Chy3G064030.1 Chy03g01423 223584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01423 177 Pfam Thioredoxin 63 163 IPR013766 -
Chy03g01423 177 PRINTS Thioredoxin family signature 131 142 - -
Chy03g01423 177 PRINTS Thioredoxin family signature 84 92 - -
Chy03g01423 177 PRINTS Thioredoxin family signature 92 101 - -
Chy03g01423 177 ProSiteProfiles Thioredoxin domain profile. 43 167 IPR013766 -
Chy03g01423 177 ProSitePatterns Thioredoxin family active site. 85 103 IPR017937 -
Chy03g01423 177 PANTHER THIOREDOXIN 55 170 - -
Chy03g01423 177 PANTHER THIOREDOXIN 55 170 - -
Chy03g01423 177 SUPERFAMILY Thioredoxin-like 51 167 IPR036249 -
Chy03g01423 177 CDD TRX_family 74 161 - -
Chy03g01423 177 Gene3D Glutaredoxin 50 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01423 K03671 trxA; thioredoxin 1 - csv:101212030 226.868
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy03g01423 Chy04g00470 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00040 Chy-Chr2:285832 Chy03g01423 Chy-Chr3:16946761 4.05E-17 dispersed
Chy03g01044 Chy-Chr3:13931995 Chy03g01423 Chy-Chr3:16946761 1.36E-08 dispersed
Chy03g01423 Chy-Chr3:16946761 Chy04g00470 Chy-Chr4:4387568 1.32E-39 dispersed
Chy03g01542 Chy-Chr3:17606516 Chy03g01423 Chy-Chr3:16946761 8.82E-06 dispersed
Chy03g01422 Chy-Chr3:16942747 Chy03g01423 Chy-Chr3:16946761 2.92E-26 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1015 . . . . . . . . Cmo05g00277 Cmo12g00390 . . . Car12g00416 . . Cpe07g00394 Bhi04g00209 . . . Hepe10g0604 . . Cla08g01456 Cam08g1941 Cec08g1515 Cco08g1654 Clacu08g1631 . Cre08g1417 . . . . . . Chy04g00470 Cme03g01919 . . . . . . . . . . . Cma12g00439 . Car05g00225 . Cpe11g00225 . . . . . . . . . . . . . . . Lsi08g01362 Csa02g02092 Chy03g01423 Cme04g00516
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002761 0 2 0 0 0 2 4 2 2 2 2 2 3 2 2 3 2 0 3 2 3 1 3 2 2 3 2 2 3 0 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01423 Chy_Chr03 FPKM 0.924541 0.0 1.123357 1.95713 4.295268 2.660737 2.463939 1.751432 1.277994 3.250565