Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01425 ATGGAGAAACTGGCAATTCCTTGCCAAACAAACCCTCCAATTTCTGGCCCTGCTTCCGTTATCAAACCCAGACCCCTTAAATTCTCTTCAAAACCAATTAAAACTTCGATATTTTTCACCTACAAACTTACTTCTAAGTTCAATGATGACCATTTGAGTTACCTTTGCAGCAATGGGCTACTCCGTGAAGCCATAAAAGCCATCGATTCAATGTCTAAACGTGGGTCTAAGTTAAGCACCAACACGTATATCAATTTGCTTCAAACTTGCATAGATGTGGGTTCTATTGAACTGGGTCGTGAGCTTCATGTTCGTATGGGTTTAGTCGATCGGGTAAACCCATTTGTTGAGACGAAGCTAGTAAGTATGTATGCGAAATGTGGGTGTCTTAAGGATGCACGCAAGGTGTTTGATGGAATGCAGGAGAGAAATTTGTATACTTGGTCGGCAATGATAGGGGCATATTCGAGAGAGCAGAGATGGAAAGAAGTAGTTAAACTTTTCTTTTTGATGATCGGAGATGGGGTGCTGCCTGATGCCTTTCTTTTCCCAAAAATACTACAGGCTTGTGGGAATTGCGAGGATCTTGAAACTGTGAAGTTGATACATTCTCTCGTTATTCGATGTGGGTTGAGTTGTTATATGCGTCTGAGCAATTCTATTTTGACGGCATTTGTCAAATGTGGGAAGTTGAGTCTAGCTAGGAAGTTCTTTGGGAACATGGACGAAAGAGATGGGGTCTCTTGGAATGTTATGATAGCTGGTTATTGCCAGAAGGGAAATGGTGATGAAGCTAGGAGATTGCTTGACACGATGAGCAATCAAGGATTCAAACCAGGTTTGGTTACTTATAACATAATGATTGCTTGTTATAGCCAGTTGGGGGATTGTGATCTTGTTATAGACTTGAAGAAGAAGATGGAGAGTGTGGGTTTAGCGCCTGATGTCTATACTTGGACCTCAATGATTTCAGGTTTTGCTCAAAGCAGCAGGATTAGTCAGGCATTGGATTTCTTCAAGAAGATGATTCTTGCAGGGGTTGAACCAAATACTATAACTATTGCAAGTGCGACCTCAGCCTGTGCTTCCTTAAAATCACTGCAAAAAGGACTAGAAATACATTGTTTTGCAATTAAAATGGGAATTGCGCGTGAAACATTGGTTGGGAATTCACTTATTGATATGTATTCTAAATGTGGAAAATTGGAAGCTGCTCGCCATGTCTTTGACACGATCTTAGAAAGAGATGTTTATACATGGAACTCGATGATTGGAGGATATTGTCAGGCTGGATATGGTGGAAAAGCATACGAACTTTTTATGAGATTAAGGGAATCAAATGTCATGGCTAATGTTGTTACATGGAATGCGATGATATCAGGATGCATACAGAATGGAGATGAGGATCAAGCTATGGACCTCTTTCAAATAATGGAAAAAGATGGGGGGGTTAAGCGGAATACAGCATCCTGGAATTCTCTGATTGCTGGGTACCATCAGCTTGGTGAAAAGAACAAAGCTCTAGCAATATTTCGACAAATGCAGTCTCTTAATTTTAGTCCTAATTCAGTGACTATCTTGAGCATTTTACCAGCTTGTGCAAATGTAATGGCAGAGAAAAAGATAAAGGAAATCCATGGTTGTGTGTTGCGCAGAAACCTGGAATCTGAGCTAGCTGTTGCAAACTCACTTGTAGACACTTACGCCAAGTCAGGGAACATTAAATATTCAAGAACCGTCTTTGATGGCATGCCATCCAAAGATATTATCACCTGGAATTCAATTATTGCAGGATATATTTTACATGGTTGTTCAGATTCTGCATTTCAATTGTTTGATCAGATGAGAAATCTTGGAATTAGGCCAAACCGAGGTACTTTGGCTAGTATTATTCATGCCTATGGCATTGCCGGAATGGTAGACAAGGGAAGACATGTTTTTTCTAGCATTACTGAAGAACATCAAATTCTTCCAACTTTAGATCATTATTTGGCTATGGTAGATCTCTATGGACGTTCTGGGAGGCTTACAGATGCAATAGAGTTCATCGAAGATATGCCTATAGAACCCGATGTCTCTATCTGGACCAGCTTACTTACGGCCTGCAGATTTCATGGGAACTTAAACTTGGCAGTTCAAGCAGCCAAGCGCCTCCACGAATTGGAGCCTGATAATCATGTGATATACCGTTTATTAGTGCAGGCATATGCTTTATATGGGAAGTTTGAACAAACCCTAAAAGTGAGAAAGCTTGGAAAAGAGAGTGCGATGAAGAAATGTACAGCACAGTGCTGGGTTGAAGTCAGGAATAAAGTCCATTTATTTGTCACAGGCGACCAGTCTAAACTTGACGTTCTAAATACTTGGATAAAGAGCATTGAAGGGAAAAGTTTGGCTGAGAATGAATTGTTCAATACACTTCGACAGAGTTTTGATGATTCTCGAAAAATGAAGCCAATCATGGCTGGTCCTTTTGGGGGACCAGCTGGAAATAATTGGGATGATGGAGTTTATTCGACTATCAGGCAGTTGATAATTTGCCATGGAGCTGGTATCGACTCCATTAAGATTCAATATGATGTGAAGGGAAGTTCAATTTGGTCAGATAGACATGGAGGAAATGGTGGCACTAAAACAGACACGGTGAAGCTTGATTTTCCGGATGAGTACTTGACTATGATCCGTGGACACTATGGTAGCTTTGTGTCATTTGACAAAGTGTTTGTTCGATCCCTGACTTTTATGAGCAACAAAAAGAAGTATGGACCTTACGGGGTCGAACAAGGAACAATTTTCTCTTTTCCAACGACTGAGGGCAAGATTGTTGGGTTCCATGGCAGGAGTGGATTGTACCTGGATGCCATTGGAGTTTATCTAAAGCCTATGGCTATACAATCACCATCTAAAGCAATGATTCAATCACGGGACCATCTTGCTAGTAAGACTGAAAATGAAGGGTATTCAATTATACAAGGAAGTGTTGGTCAAAATTATGATATTGTTCTTGCTGTCAGGCAGAAGGATGAATTCAAAAAACCTCTTCCAACTACTATCTCAAAACAAGTATCTAGTTCCTCAAGCTCAGAATCAAGTGATGATGAATCCACAATTAAGAGGCCTGTTAAGAAGGGACCGTCTAAAGTCGAAAATGTGGTACCATGTGGACCTTGGGGCGGCTCGGGTGGAACAGTATTTGATGATGGATGTTACTCTGGTATTAGACAAATTAATGTGTCACGCAATGTTGGAATCGTATACATTAGAGTTCTGTATGCTTGTGATGAAGAATCTATATGGGGAGCACGGGCAGGTGGAACAGGAGGATTCAAATATGACAAGGTTATCTTTGAATATCCATATGAAATCTTGACTCATGTAACTGGATACTATGGGCCTGTCATGTACATGGGACCTAATGTTATCAAGTCACTCACATTTCATACTACTAAAGCGAAGTACGGACCATTTGGAGAGGCACAAGGAACCCCCTTTAGTACCAATGTCAAGGAGGGGAAGATTGTTGGATTTCATGGGAGGAAAGGTTTGTTCCTAGATGCTCTTGGTGTGCACATAGTTGAAGGAAAGGTGACCCCACTGTCTCGTCCTCCTTCCAGGGATATAATTCCTGCTGCGCCGCCACTTCTTGAAAATAGTAATGCCCCTTGGACTATGAAACTAGCACCTTCAAAAGGAGCACTTGAAGAGATTGCTCGTGGTGTAGTAAAAGAACCAGCACCCTGTGGACCTGGACCATGGGGCGGAGATGGCGGTAAACCATGGGATGATGGAGTATTTTCTGGCATTAAACAGATATACTTGACACGGTCTCTTGAAGCTTTTTGTTCAATTCAAATTGAATACGATCGAAACAAACAATCAGTTTGGTCAGTTAGGCATGGAGGAAACAGTGGAACAACCATACATCGGGTAAAATTGGATTATCCACATGAAGTGTTAACATGTATATCAGGATATTACGGTTTCATCGGTAAAGATGAGAGACAACAAGCTGTAAAGTCGCTTACATTTCACACAAGCAGGGGGAAGTTCGGTCCATTTGGGGAGGAGGTAGGGTCGTTTTTCACGTCAACAACGACAGAGGGCAAAGTAGTTGGCTTCCATGGGAGGAGCAGCTTGTATTTGGACGCCATCGGAGTTCACATGCAACACTGGCTAGGAAGCCAAAGGGCAACCAGGTCGTCCTTTTTCAAACTGTTCTGA 4221 41.53 MEKLAIPCQTNPPISGPASVIKPRPLKFSSKPIKTSIFFTYKLTSKFNDDHLSYLCSNGLLREAIKAIDSMSKRGSKLSTNTYINLLQTCIDVGSIELGRELHVRMGLVDRVNPFVETKLVSMYAKCGCLKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVKLFFLMIGDGVLPDAFLFPKILQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLARKFFGNMDERDGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMIACYSQLGDCDLVIDLKKKMESVGLAPDVYTWTSMISGFAQSSRISQALDFFKKMILAGVEPNTITIASATSACASLKSLQKGLEIHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILERDVYTWNSMIGGYCQAGYGGKAYELFMRLRESNVMANVVTWNAMISGCIQNGDEDQAMDLFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPACANVMAEKKIKEIHGCVLRRNLESELAVANSLVDTYAKSGNIKYSRTVFDGMPSKDIITWNSIIAGYILHGCSDSAFQLFDQMRNLGIRPNRGTLASIIHAYGIAGMVDKGRHVFSSITEEHQILPTLDHYLAMVDLYGRSGRLTDAIEFIEDMPIEPDVSIWTSLLTACRFHGNLNLAVQAAKRLHELEPDNHVIYRLLVQAYALYGKFEQTLKVRKLGKESAMKKCTAQCWVEVRNKVHLFVTGDQSKLDVLNTWIKSIEGKSLAENELFNTLRQSFDDSRKMKPIMAGPFGGPAGNNWDDGVYSTIRQLIICHGAGIDSIKIQYDVKGSSIWSDRHGGNGGTKTDTVKLDFPDEYLTMIRGHYGSFVSFDKVFVRSLTFMSNKKKYGPYGVEQGTIFSFPTTEGKIVGFHGRSGLYLDAIGVYLKPMAIQSPSKAMIQSRDHLASKTENEGYSIIQGSVGQNYDIVLAVRQKDEFKKPLPTTISKQVSSSSSSESSDDESTIKRPVKKGPSKVENVVPCGPWGGSGGTVFDDGCYSGIRQINVSRNVGIVYIRVLYACDEESIWGARAGGTGGFKYDKVIFEYPYEILTHVTGYYGPVMYMGPNVIKSLTFHTTKAKYGPFGEAQGTPFSTNVKEGKIVGFHGRKGLFLDALGVHIVEGKVTPLSRPPSRDIIPAAPPLLENSNAPWTMKLAPSKGALEEIARGVVKEPAPCGPGPWGGDGGKPWDDGVFSGIKQIYLTRSLEAFCSIQIEYDRNKQSVWSVRHGGNSGTTIHRVKLDYPHEVLTCISGYYGFIGKDERQQAVKSLTFHTSRGKFGPFGEEVGSFFTSTTTEGKVVGFHGRSSLYLDAIGVHMQHWLGSQRATRSSFFKLF* 1407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16950055 16956385 + Chy3G064050.1 Chy03g01425 223586

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01425 1406 CDD Jacalin 1260 1389 IPR033734 GO:0030246
Chy03g01425 1406 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 521 IPR002885 -
Chy03g01425 1406 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Chy03g01425 1406 TIGRFAM PPR: pentatricopeptide repeat domain 418 448 IPR002885 -
Chy03g01425 1406 TIGRFAM PPR: pentatricopeptide repeat domain 453 484 IPR002885 -
Chy03g01425 1406 TIGRFAM PPR: pentatricopeptide repeat domain 282 316 IPR002885 -
Chy03g01425 1406 TIGRFAM PPR: pentatricopeptide repeat domain 119 145 IPR002885 -
Chy03g01425 1406 TIGRFAM PPR: pentatricopeptide repeat domain 247 279 IPR002885 -
Chy03g01425 1406 TIGRFAM PPR: pentatricopeptide repeat domain 146 180 IPR002885 -
Chy03g01425 1406 TIGRFAM PPR: pentatricopeptide repeat domain 317 351 IPR002885 -
Chy03g01425 1406 TIGRFAM PPR: pentatricopeptide repeat domain 590 623 IPR002885 -
Chy03g01425 1406 TIGRFAM PPR: pentatricopeptide repeat domain 490 522 IPR002885 -
Chy03g01425 1406 Pfam PPR repeat 120 144 IPR002885 -
Chy03g01425 1406 Pfam PPR repeat 390 416 IPR002885 -
Chy03g01425 1406 Pfam PPR repeat 453 482 IPR002885 -
Chy03g01425 1406 Pfam PPR repeat 663 686 IPR002885 -
Chy03g01425 1406 Pfam PPR repeat 219 244 IPR002885 -
Chy03g01425 1406 Pfam PPR repeat 55 75 IPR002885 -
Chy03g01425 1406 Pfam PPR repeat 418 448 IPR002885 -
Chy03g01425 1406 Pfam PPR repeat 146 176 IPR002885 -
Chy03g01425 1406 ProSiteProfiles Jacalin-type lectin domain profile. 819 961 IPR001229 -
Chy03g01425 1406 MobiDBLite consensus disorder prediction 1016 1031 - -
Chy03g01425 1406 SMART Jacalin_2 1062 1193 IPR001229 -
Chy03g01425 1406 SMART Jacalin_2 1257 1390 IPR001229 -
Chy03g01425 1406 SMART Jacalin_2 830 961 IPR001229 -
Chy03g01425 1406 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
Chy03g01425 1406 Gene3D Tetratricopeptide repeat domain 476 543 IPR011990 GO:0005515
Chy03g01425 1406 ProSiteProfiles Jacalin-type lectin domain profile. 1051 1193 IPR001229 -
Chy03g01425 1406 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 49 381 - -
Chy03g01425 1406 PANTHER BNAA06G13890D PROTEIN 384 447 - -
Chy03g01425 1406 PANTHER BNAA06G13890D PROTEIN 49 381 - -
Chy03g01425 1406 MobiDBLite consensus disorder prediction 1015 1048 - -
Chy03g01425 1406 Pfam E motif 705 767 IPR046848 -
Chy03g01425 1406 Gene3D - 1241 1389 IPR036404 -
Chy03g01425 1406 Gene3D - 1041 1192 IPR036404 -
Chy03g01425 1406 Gene3D - 807 959 IPR036404 -
Chy03g01425 1406 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Chy03g01425 1406 CDD Jacalin 1062 1191 IPR033734 GO:0030246
Chy03g01425 1406 SUPERFAMILY Mannose-binding lectins 1246 1388 IPR036404 -
Chy03g01425 1406 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Chy03g01425 1406 SUPERFAMILY Mannose-binding lectins 1053 1191 IPR036404 -
Chy03g01425 1406 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 384 447 - -
Chy03g01425 1406 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 523 791 - -
Chy03g01425 1406 SUPERFAMILY Mannose-binding lectins 819 961 IPR036404 -
Chy03g01425 1406 Pfam PPR repeat family 487 534 IPR002885 -
Chy03g01425 1406 Pfam PPR repeat family 587 634 IPR002885 -
Chy03g01425 1406 Pfam PPR repeat family 314 354 IPR002885 -
Chy03g01425 1406 Pfam PPR repeat family 246 290 IPR002885 -
Chy03g01425 1406 ProSiteProfiles Jacalin-type lectin domain profile. 1246 1390 IPR001229 -
Chy03g01425 1406 PANTHER BNAA06G13890D PROTEIN 523 791 - -
Chy03g01425 1406 Gene3D Tetratricopeptide repeat domain 210 365 IPR011990 GO:0005515
Chy03g01425 1406 Gene3D Tetratricopeptide repeat domain 49 209 IPR011990 GO:0005515
Chy03g01425 1406 SUPERFAMILY TPR-like 491 744 IPR011990 GO:0005515
Chy03g01425 1406 CDD Jacalin 830 960 IPR033734 GO:0030246
Chy03g01425 1406 Gene3D Tetratricopeptide repeat domain 366 467 IPR011990 GO:0005515
Chy03g01425 1406 Gene3D Tetratricopeptide repeat domain 544 636 IPR011990 GO:0005515
Chy03g01425 1406 Gene3D Tetratricopeptide repeat domain 637 761 IPR011990 GO:0005515
Chy03g01425 1406 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
Chy03g01425 1406 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 451 485 IPR002885 -
Chy03g01425 1406 SUPERFAMILY HCP-like 257 519 - -
Chy03g01425 1406 Pfam Jacalin-like lectin domain 1062 1191 IPR001229 -
Chy03g01425 1406 Pfam Jacalin-like lectin domain 830 961 IPR001229 -
Chy03g01425 1406 Pfam Jacalin-like lectin domain 1257 1389 IPR001229 -
Chy03g01425 1406 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01425 - - - csv:101214358 1564.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00841 Chy-Chr3:11624460 Chy03g01425 Chy-Chr3:16950055 3.90E-08 dispersed
Chy03g01425 Chy-Chr3:16950055 Chy12g00451 Chy-Chr12:5615370 7.86E-20 dispersed
Chy04g00497 Chy-Chr4:4862972 Chy03g01425 Chy-Chr3:16950055 9.67E-10 dispersed
Chy04g00500 Chy-Chr4:4880514 Chy03g01425 Chy-Chr3:16950055 2.00E-15 dispersed
Chy04g00501 Chy-Chr4:4905649 Chy03g01425 Chy-Chr3:16950055 7.67E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1012 Blo01g01579 . Bda01g00513 . . . . Bma01g02342 Cmo05g00275 Cmo12g00391 . . . Car12g00417 . . Cpe07g00395 . . . . . . . Cla08g01457 . . . . . . . Cone7ag1852 . . . . . Cme03g01921 . . . . . . . . Sed01g2548 . . Cma12g00440 Cma05g00270 . . Cpe11g00223 . Bhi09g02137 Tan01g4934 Cmetu04g1048 . . Mch11g0183 . . . . . . . . Lsi08g01363 Csa02g02090 Chy03g01425 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002824 2 1 2 2 1 2 2 2 2 1 1 2 3 1 1 3 2 2 3 2 2 2 2 1 0 1 1 2 3 2 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01425 Chy_Chr03 FPKM 4.999449 5.983468 4.116265 3.795972 3.353194 3.04637 3.406324 1.903255 2.141297 1.873076