Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01447 ATGTCTCGTCCGAGTTTTTTACTTGCTATTAGTGTCATTGCGGCGGTCTTAGTGGCCGAGGTTACGGCAGCGGCGGTAACTACGGCTGTTTTGATAACTGTGGATCAATCTGGGAAGGGGAACTTTACTAAGATTCAAGAGGCGATTGATGCAGTGCCGATGAATAACAAGGAGGAAGTGTTTATTTCTGTGAAGGCGGGGATTTATAGAGAGAAGGTGGTGGTTCCGGCGAATAAACCGTTCATTACTATAAGTGGAAGAAGAGCGGTGGATACGATCATCAGTTGGAATGATAGCAAGAATACTTATAATTCTGCAACTCTTGCAGTTTTGGCCTCTGATTTCGTTGGACGATATCTCACAATTCAGAATGGATACGGGGCGGGTGCACAAGCAGTAGCCTTACGAGTATCTGGAGATAGAGTATCATTTACAGCATGTAGATTCTTAGGCCATCAAGACACTCTCCTAGATGACATTGGCCGTCATTACTACAAAAGTTGTTACATTCAAGGAGCCACCGATTTCATATGTGGAAACGCAGCTTCATTGTTCGAGAATTGCCATCTACGGTCAGTTTCAGAAGACGTCGGGACGATCACAGCCCAACGGAGAGAATCGCCGTCGGAGAATACAGGGTTCGTATTCATGGGGTGTAAGATCACGGGAATAAACTCGGCGGTTTTAGGAAGGCCGTGGGGAGCATTCTCTAGAGTCGTGTTTGGATTCACTTTCATGTCCGACGTTATTCTCCCTCAGGGTTGGGATAATTGGCAAGACCCATCCAAACAAAGTACGGTTTACTATGGGCAATACAAATGTTATGGAAAAGGAGCAAATCCTTCGAGAAGGGTACCGTGGTCATTTACTAACATGACTGCCCAAGATGCTGCACCATTTTTCACTAAATCCTTCATTGGTGCTGCTGATTGGCTCAGGCCATTGCCGAATCGTTTCAAGAGAGCCTTCTCTTCACATCCCTAA 984 45.73 MSRPSFLLAISVIAAVLVAEVTAAAVTTAVLITVDQSGKGNFTKIQEAIDAVPMNNKEEVFISVKAGIYREKVVVPANKPFITISGRRAVDTIISWNDSKNTYNSATLAVLASDFVGRYLTIQNGYGAGAQAVALRVSGDRVSFTACRFLGHQDTLLDDIGRHYYKSCYIQGATDFICGNAASLFENCHLRSVSEDVGTITAQRRESPSENTGFVFMGCKITGINSAVLGRPWGAFSRVVFGFTFMSDVILPQGWDNWQDPSKQSTVYYGQYKCYGKGANPSRRVPWSFTNMTAQDAAPFFTKSFIGAADWLRPLPNRFKRAFSSHP* 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17086181 17088154 + Chy3G064270.1 Chy03g01447 223608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01447 327 Gene3D - 26 321 IPR012334 -
Chy03g01447 327 PANTHER PECTINESTERASE 11-RELATED 11 313 - -
Chy03g01447 327 Pfam Pectinesterase 32 307 IPR000070 GO:0030599|GO:0042545
Chy03g01447 327 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 11 313 - -
Chy03g01447 327 SUPERFAMILY Pectin lyase-like 26 316 IPR011050 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01447 K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] - csv:101215800 622.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01447 Chy-Chr3:17086181 Chy09g01087 Chy-Chr9:13184232 1.77E-77 dispersed
Chy01g01169 Chy-Chr1:13596924 Chy03g01447 Chy-Chr3:17086181 2.25E-79 transposed
Chy02g01167 Chy-Chr2:8362276 Chy03g01447 Chy-Chr3:17086181 4.41E-79 transposed
Chy02g01301 Chy-Chr2:9587908 Chy03g01447 Chy-Chr3:17086181 7.92E-80 transposed
Chy04g01165 Chy-Chr4:17860892 Chy03g01447 Chy-Chr3:17086181 2.63E-14 transposed
Chy05g00554 Chy-Chr5:6044867 Chy03g01447 Chy-Chr3:17086181 3.47E-58 transposed
Chy05g01031 Chy-Chr5:14914664 Chy03g01447 Chy-Chr3:17086181 2.77E-66 transposed
Chy07g01088 Chy-Chr7:15822713 Chy03g01447 Chy-Chr3:17086181 6.24E-81 transposed
Chy07g01267 Chy-Chr7:17393411 Chy03g01447 Chy-Chr3:17086181 5.71E-80 transposed
Chy11g00374 Chy-Chr11:3460066 Chy03g01447 Chy-Chr3:17086181 1.65E-131 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g961 . . . . . . . . . Cmo12g00413 . . . Car12g00436 . . Cpe07g00413 Bhi04g00183 . . . Hepe10g0628 . . Cla08g01478 Cam08g1965 Cec08g1540 Cco08g1677 Clacu08g1655 . Cre08g1439 . . Cone17ag1350 Cone20ag0134 . . . Cme03g01944 . . . . . . . . . . . Cma12g00463 . . . . . . . . . . . . Cla11g00409 Cam11g0456 Cec11g0451 Cco11g0442 Clacu11g0580 Cmu11g0438 Cre11g0920 . Csa02g02065 Chy03g01447 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003216 0 2 0 0 0 2 2 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 3 1 2 3 2 2 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01447 Chy_Chr03 FPKM 11.330159 12.613457 22.876944 21.667257 7.538715 7.252256 6.506487 23.275906 27.066763 24.75519