Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01477 ATGGTATCGGCAGAGAATAATTCTCCAACAGCGACGGTTGCTGCATCTTCCCCGCCAGCAGTTGAAATCGAGACAATCGACACCGTGACTCCAGCAAAGAAGAAGCGGAATCTCCCAGGGATGCCAGATCCAACTGCGGAGGTTATAGCTCTCTCGCCAAAATCGCTTCTAGCAACAAACCGATTCGTGTGCGAGATCTGCAACAAAGGATTCCAGCGAGACCAGAACCTGCAACTTCACAGGCGCGGCCACAACTTACCTTGGAAGCTCCGGCAAAGGACGAGCAATGAAATTCGAAAACGAGTTTACGTCTGTCCAGAACCTTCTTGCGTGCATCATAATCCGGCTAGGGCACTGGGTGATCTAACCGGCATTAAAAAGCACTTCTCTAGAAAGCACTGCGAGAAGAAGTGGAAGTGCGAGCGGTGCTCCAAGAAATACGCCGTTCAATCGGATTGGAAAGCGCATATGAAAACCTGTGGGACTAGAGAATATAAATGCGATTGTGGAACTTTGTTTTCTAGGAGGGATAGTTTCATTACGCATCGGGCTTTTTGCGATGCTTTAGCGTTCGCAAGCTCGGATTCCAATGTTATTGCCGCCGCCGCCGCCTCCACAGCAGCGGTTGCTTCTTCGCCATTGGCCACCATGCCGGTGTCTCCTGGTTTGTCAATTCAAAGCTCAGAACCACCGGACATTCCCATGGGGCCTCCGCCATTAACACCAGCAGCGACAAGCTTAACCTCAGCCGTGGCCTCCACCGTTAACAAAACCAGCCCACCAAATGGCGGTGGTGCAAGCGTTTTCGCTGGTGTATTTTCTTCTTCTCCTCCCACTGTTACAAGTTCTACCCCTAATCCGCCCCATCAACTCACCACCGGCGTCAACCGACCAGACGGTGGCAATGATCCCTCAACCACCGCCATTGAGCCCACATCGCTCTCTCTCTCAACGTCCCTCTTCCTCTCATGTAGAGCCTCAGCCTCATCGGGCTCAACCTCGGCCTCTTCCATTTTTCAAGACCATACTCCACATTACTCTCTGTCGCCTCAGCCCGCCGCGATGTCCGCCACTGCCTTGCTGCAGAAGGCTGCCCAAATGGGCGTCACCAGCTCCAACGCCTCCTCTTTGCTTCGTGCCTCTGGGTTATCGTTGTCGCAGTCTCCTGGCCCCGCCATCTCCATGACGGCTGGGCTCGGTCTTGGATTCGGCAATGAACCCACCACGCGGGATCTCCTAGGACTGGGCATGGGCGGAGGAGGAGGTGGTGGTGGTGGGGTTTCCGGCAGTGGTATTTCTGCTCTTTTCACGTCGTTTGATGGTTGTGACGTTGAAGCTGCCTCGCCTTACGGCGGCGGCGGGAGTAATGGGTTATGA 1377 54.25 MVSAENNSPTATVAASSPPAVEIETIDTVTPAKKKRNLPGMPDPTAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHCEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAFASSDSNVIAAAAASTAAVASSPLATMPVSPGLSIQSSEPPDIPMGPPPLTPAATSLTSAVASTVNKTSPPNGGGASVFAGVFSSSPPTVTSSTPNPPHQLTTGVNRPDGGNDPSTTAIEPTSLSLSTSLFLSCRASASSGSTSASSIFQDHTPHYSLSPQPAAMSATALLQKAAQMGVTSSNASSLLRASGLSLSQSPGPAISMTAGLGLGFGNEPTTRDLLGLGMGGGGGGGGGVSGSGISALFTSFDGCDVEAASPYGGGGSNGL* 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17237665 17240358 + Chy3G064570.1 Chy03g01477 223638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01477 458 SMART c2h2final6 138 158 IPR013087 -
Chy03g01477 458 SMART c2h2final6 62 84 IPR013087 -
Chy03g01477 458 SMART c2h2final6 103 133 IPR013087 -
Chy03g01477 458 Gene3D Classic Zinc Finger 117 193 - -
Chy03g01477 458 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 3 436 - -
Chy03g01477 458 SUPERFAMILY beta-beta-alpha zinc fingers 61 159 IPR036236 -
Chy03g01477 458 MobiDBLite consensus disorder prediction 276 310 - -
Chy03g01477 458 Pfam Zinc-finger of C2H2 type 62 84 - -
Chy03g01477 458 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Chy03g01477 458 MobiDBLite consensus disorder prediction 221 245 - -
Chy03g01477 458 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Chy03g01477 458 Gene3D Classic Zinc Finger 62 105 - -
Chy03g01477 458 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 436 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01477 Chy-Chr3:17237665 Chy07g01281 Chy-Chr7:17522003 3.63E-113 dispersed
Chy02g00726 Chy-Chr2:4428239 Chy03g01477 Chy-Chr3:17237665 2.28E-31 transposed
Chy12g00769 Chy-Chr12:11794489 Chy03g01477 Chy-Chr3:17237665 4.20E-24 transposed
Chy12g01375 Chy-Chr12:17952767 Chy03g01477 Chy-Chr3:17237665 7.86E-74 transposed
Chy12g01597 Chy-Chr12:19527270 Chy03g01477 Chy-Chr3:17237665 1.66E-74 transposed
Chy02g00663 Chy-Chr2:4027016 Chy03g01477 Chy-Chr3:17237665 4.87E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17742 PF12874 zf-met 0.0032 CL0361 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01477 K25869 - csv:101217471 773.467