Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01480 ATGGCTTCCAAACCTCCACCCTCGTCCACCGAGAAACAAAGAGATTTCTTCAATCATCTCGAAGCTTATCTCGCAAAGAGAGACGGCGTCGACAAGCTCTTGAAAATCTCCAGGTACACCACCAAGATCATCCTCTCCTCTTCCGCTATCTCCGAATCGCATCCTCTGACTCAACGTCTCAAGAGCTTTGAGTCCAGCGTCGGCGTCAGCCGCAAAGCCTTTCGTCTTGGAAAGTTTATCCAGGATCTCAACGCCTTAAGAAATTCGCATTTCGAATCTAACCATGAATTTCTGCTCGCTCTCCTTGCGTATGGCGGAGAAGGATTTTATTACTTTGTCGAACAATTCATTTGGTTAGCTAAATCTGGTTTGATTGACAAACGACACTCGAGTCGGTTGCAGAAGATCAGTGCGTGGGCGGAATTAATCGGGTATATTGGGAGCATTTCTTTGAAATTTAGGGATTTGAATCGGATTCTTGAAGATGAGGCGTGTTTGAAAGCGAGTATTGAGATTGCTGTCAATAGAGGAATTGGGCATCGGGAAGAAGAAGAGAAGATGAAGAAGTTGCGTGCGAAGATGTTGATGAAGAAGCTTTCGATTGTTCAAGATTTTGCCGATGGATTCATGGCGGTGGCGGACGTTCGTGATGGGAACGGCCGGTTTTCAGGTCCTCTTCTAATTTCTTTTGCTGGGCTTCTCTCGGCATTGATTAGCACTCATAAGAATTGGACATCATGCTGA 744 45.7 MASKPPPSSTEKQRDFFNHLEAYLAKRDGVDKLLKISRYTTKIILSSSAISESHPLTQRLKSFESSVGVSRKAFRLGKFIQDLNALRNSHFESNHEFLLALLAYGGEGFYYFVEQFIWLAKSGLIDKRHSSRLQKISAWAELIGYIGSISLKFRDLNRILEDEACLKASIEIAVNRGIGHREEEEKMKKLRAKMLMKKLSIVQDFADGFMAVADVRDGNGRFSGPLLISFAGLLSALISTHKNWTSC* 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17257563 17258306 - Chy3G064600.1 Chy03g01480 223641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01480 247 PANTHER PEROXISOMAL BIOGENESIS FACTOR 11 9 247 - -
Chy03g01480 247 Pfam Peroxisomal biogenesis factor 11 (PEX11) 18 244 IPR008733 GO:0005779|GO:0016559
Chy03g01480 247 PANTHER PEROXISOMAL MEMBRANE PROTEIN 11A 9 247 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01480 - - - csv:101219608 459.914
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01480 Chy-Chr3:17257563 Chy06g00850 Chy-Chr6:6120266 5.70E-31 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g901 . . . . . . . . . Cmo12g00434 . . . Car12g00459 Sed02g1607 . Cpe07g00437 Bhi04g00270 Tan02g1939 Cmetu06g0284 . Hepe10g0662 . Lcy13g2003 Cla08g01509 Cam08g1998 Cec08g1573 Cco08g1710 Clacu08g1688 . Cre08g1471 . . . . . . . Cme03g01974 Blo17g00812 . Bda08g01296 . . . . . . . . Cma12g00488 Cma05g00226 Car05g00188 . . . . . . . . . . . . . . . . . Lsi08g01413 . Chy03g01480 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004435 1 1 1 1 1 2 2 2 2 1 1 2 2 1 1 2 2 1 2 2 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01480 Chy_Chr03 FPKM 11.622807 24.261875 17.712517 15.202972 48.544197 37.201244 38.747128 23.67528 18.363577 17.763931