Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy03g01490 | ATGGATTTGGTGGTTGATTCTCTTTATGTTTTTCCTTTGGTTCTGTTGGTGGGTTGTGTAGATATGGAAAGCGGGTTTGGGGAATCGACGAGTAGTCAACCTCAAAGTCCTTCTTGTTCCGATAACAATGGTGATGCGAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCTTATGTGGTCATCTTTTCTGTTGGCCATGTCTTTATAAGTGGCTGCACATTCATTCTCATCCCCAGGAATGTCCAGTTTGCAAGGCTATCATTGAAGAGCAAAAATTGGTTCCTTTATATGGTAGGGGAAAGACATCGACTGACCCGAGATCGAAAAGTATTCCTGGAATTAATATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGTCCTCCTCCAGAACCAAATCCTTTTCCTCACAATGGGTTTGGATTCATGGGAGGACTTGGAGGGTTCGCCCCAATGGCATCGACGAGGTTTGGCAATTTTACTTTGTCTGCAGCTTTTGGTGGTCTCGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGCGCTAACTTTCCTTATGGGTTTCCTAACATGTTTCATGGTAGCCATGGTCACGCCCATGGATACTATCACCAGCTTCGTCAAGGTCAGCAAGATTACTATCTGAAGCGCCTGCTTTTCCTTATTGGTTTTTTTGTTCTTCTTGCCCTAATCTGGCAATAG | 756 | 44.05 | MDLVVDSLYVFPLVLLVGCVDMESGFGESTSSQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANFPYGFPNMFHGSHGHAHGYYHQLRQGQQDYYLKRLLFLIGFFVLLALIWQ* | 252 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 17316482 | 17317334 | + | Chy3G064700.1 | Chy03g01490 | 223651 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy03g01490 | 251 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 25 | 117 | IPR013083 | - | |
Chy03g01490 | 251 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 24 | 251 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Chy03g01490 | 251 | SUPERFAMILY | RING/U-box | 47 | 104 | - | - | |
Chy03g01490 | 251 | SMART | ring_2 | 51 | 91 | IPR001841 | - | |
Chy03g01490 | 251 | Pfam | Zinc finger, C3HC4 type (RING finger) | 50 | 91 | - | - | |
Chy03g01490 | 251 | PANTHER | OS12G0636000 PROTEIN | 24 | 251 | - | - | |
Chy03g01490 | 251 | ProSitePatterns | Zinc finger RING-type signature. | 66 | 75 | IPR017907 | - | |
Chy03g01490 | 251 | MobiDBLite | consensus disorder prediction | 105 | 143 | - | - | |
Chy03g01490 | 251 | ProSiteProfiles | Zinc finger RING-type profile. | 51 | 92 | IPR001841 | - | |
Chy03g01490 | 251 | CDD | RING-HC_AtRMA_like | 49 | 93 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy03g01490 | Chy-Chr3:17316482 | Chy11g01147 | Chy-Chr11:17309667 | 6.97E-28 | dispersed | |
Chy04g01313 | Chy-Chr4:19650662 | Chy03g01490 | Chy-Chr3:17316482 | 2.16E-23 | transposed | |
Chy04g01788 | Chy-Chr4:24171891 | Chy03g01490 | Chy-Chr3:17316482 | 3.50E-29 | transposed | |
Chy02g00970 | Chy-Chr2:6454953 | Chy03g01490 | Chy-Chr3:17316482 | 1.91E-69 | wgd | |
Chy03g01490 | Chy-Chr3:17316482 | Chy07g00084 | Chy-Chr7:756329 | 2.90E-28 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy03g01490 | K10666 | - | csv:101221027 | 427.943 |