Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01490 ATGGATTTGGTGGTTGATTCTCTTTATGTTTTTCCTTTGGTTCTGTTGGTGGGTTGTGTAGATATGGAAAGCGGGTTTGGGGAATCGACGAGTAGTCAACCTCAAAGTCCTTCTTGTTCCGATAACAATGGTGATGCGAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCTTATGTGGTCATCTTTTCTGTTGGCCATGTCTTTATAAGTGGCTGCACATTCATTCTCATCCCCAGGAATGTCCAGTTTGCAAGGCTATCATTGAAGAGCAAAAATTGGTTCCTTTATATGGTAGGGGAAAGACATCGACTGACCCGAGATCGAAAAGTATTCCTGGAATTAATATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGTCCTCCTCCAGAACCAAATCCTTTTCCTCACAATGGGTTTGGATTCATGGGAGGACTTGGAGGGTTCGCCCCAATGGCATCGACGAGGTTTGGCAATTTTACTTTGTCTGCAGCTTTTGGTGGTCTCGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGCGCTAACTTTCCTTATGGGTTTCCTAACATGTTTCATGGTAGCCATGGTCACGCCCATGGATACTATCACCAGCTTCGTCAAGGTCAGCAAGATTACTATCTGAAGCGCCTGCTTTTCCTTATTGGTTTTTTTGTTCTTCTTGCCCTAATCTGGCAATAG 756 44.05 MDLVVDSLYVFPLVLLVGCVDMESGFGESTSSQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANFPYGFPNMFHGSHGHAHGYYHQLRQGQQDYYLKRLLFLIGFFVLLALIWQ* 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17316482 17317334 + Chy3G064700.1 Chy03g01490 223651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01490 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 117 IPR013083 -
Chy03g01490 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 24 251 IPR045103 GO:0005783|GO:0006511|GO:0061630
Chy03g01490 251 SUPERFAMILY RING/U-box 47 104 - -
Chy03g01490 251 SMART ring_2 51 91 IPR001841 -
Chy03g01490 251 Pfam Zinc finger, C3HC4 type (RING finger) 50 91 - -
Chy03g01490 251 PANTHER OS12G0636000 PROTEIN 24 251 - -
Chy03g01490 251 ProSitePatterns Zinc finger RING-type signature. 66 75 IPR017907 -
Chy03g01490 251 MobiDBLite consensus disorder prediction 105 143 - -
Chy03g01490 251 ProSiteProfiles Zinc finger RING-type profile. 51 92 IPR001841 -
Chy03g01490 251 CDD RING-HC_AtRMA_like 49 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01490 Chy-Chr3:17316482 Chy11g01147 Chy-Chr11:17309667 6.97E-28 dispersed
Chy04g01313 Chy-Chr4:19650662 Chy03g01490 Chy-Chr3:17316482 2.16E-23 transposed
Chy04g01788 Chy-Chr4:24171891 Chy03g01490 Chy-Chr3:17316482 3.50E-29 transposed
Chy02g00970 Chy-Chr2:6454953 Chy03g01490 Chy-Chr3:17316482 1.91E-69 wgd
Chy03g01490 Chy-Chr3:17316482 Chy07g00084 Chy-Chr7:756329 2.90E-28 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01490 K10666 - csv:101221027 427.943