Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01493 ATGGATGAAAGTGTTTATATGATTGAAGGATGCTTTTTATTTGAGCCATTGGTGTTCCTTTTCAAGCGGTTTTTTCTTCTAACGTTCTTCAAGCATATAAGACTAAGCACCATGGGTTGGCTAAGCAAAATTTTAAAAGTTGGATCTGGTCATAGAATAGCTGAAAAGAATTACCAAGCAAACTATGACGAAGATCCGAATTCTCATCTGCCCTCAACCTCTGAGGGTTTATGGTCAGAGAACGAGAATGAAGACATTGATCGTGCAATTGCAATATCTCTTGTAGAAGAAAGTCAGAAGGCAAATAATGTAATTGATCGTGATTATCAATTGGAAGAAGATGAACTTCTTGCCAAAGCAGTACAAGAAAGCCTTAATTTGGAGTCTCCTCCACAGTATACAAGTGGAAACATGTATCAACCTTATCTACCTCAATATCAATTTGGTTCCAGAATATGTGCTGGCTGCTATAATGAGATTGGCTATGGACGTTACTTGAACTGCCTCAATGCATTTTGGCATCCAGAATGTTTCCGTTGTCGCGCTTGCAACCTCCCAATATCAGACTACGAGTTTTCTACTTCTGGGAATTTTCCATACCATAAATCTTGCTACAAGGAGAATTATCACCCAAAATGTGATGTTTGCAAGCACTTTATTCCAACAAATCCTGCTGGTCTTATTGAATATAGGGCACACCCTTTCTGGATCCAGAAATACTGTCCGTCTCATGAATACGATGGCACTCCTCGATGTTGCAGTTGCGAACGAATGGAGCCACAAGAGGTTAAGTATATTCCACTTCATGATGGTCGAAAGCTTTGCCTCGAGTGTCTCGACTCTACTATCATGGACACGAAAGAATGCCAACCTCTTTATCGCGATATACAAGAATTTTATGATGGTTTGAATATGAAAGTAGAGCAGGATGTTCCATTACTTTTGGTCGAAAGGCAAGCACTAAACGAAGCAAGAGAAGGAGAAAAACATGGCCATTATCATATCCCCGAGACAAGAGGACTGTGTCTTTCGGAGGAACAAACCATTAGCACTGTTTTAAGGCGGCCTAGATATGAAAGGGGAAATCGAGTATCAAGCACAATGTCGGAGCCCTACAAATTGACACGACATTGTGAGGTCACTGCAATTCTCATTCTGTTTGGTCTTCCTAGGTTGCTTACTGGGTCGATTTTAGCTCATGAGATGATGCACGCATGGCTACGTCTTAAAGGTTTTCGAACTCTCAGTCAAGACGTAGAAGAAGGTATCTGTCAAGTTCTAGCGCATATGTGGTTGAGTACCGAACTCATGTCTTCCCAAGACTACAACGATGTCGCCTCGACCTCATACTCTGCTGCTCCCACAACATCATCAAGAAGAAAAACCATGTCCAAATTTGAGAGAAAACTTGGGGAGTTCTTTAAACACCAGATAGAGTCGGACATGTCCCCAGTGTATGGAGATGGATTCAGAGCTGGGCAGATGGCTGTGCATAAATACGGTCTTCAGACTACCCTCGATCATATTCAAATGACCGGGACCTTTCCTTATTGA 1554 41.7 MDESVYMIEGCFLFEPLVFLFKRFFLLTFFKHIRLSTMGWLSKILKVGSGHRIAEKNYQANYDEDPNSHLPSTSEGLWSENENEDIDRAIAISLVEESQKANNVIDRDYQLEEDELLAKAVQESLNLESPPQYTSGNMYQPYLPQYQFGSRICAGCYNEIGYGRYLNCLNAFWHPECFRCRACNLPISDYEFSTSGNFPYHKSCYKENYHPKCDVCKHFIPTNPAGLIEYRAHPFWIQKYCPSHEYDGTPRCCSCERMEPQEVKYIPLHDGRKLCLECLDSTIMDTKECQPLYRDIQEFYDGLNMKVEQDVPLLLVERQALNEAREGEKHGHYHIPETRGLCLSEEQTISTVLRRPRYERGNRVSSTMSEPYKLTRHCEVTAILILFGLPRLLTGSILAHEMMHAWLRLKGFRTLSQDVEEGICQVLAHMWLSTELMSSQDYNDVASTSYSAAPTTSSRRKTMSKFERKLGEFFKHQIESDMSPVYGDGFRAGQMAVHKYGLQTTLDHIQMTGTFPY* 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17326689 17330733 - Chy3G064730.1 Chy03g01493 223654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01493 517 Gene3D Cysteine Rich Protein 146 227 - -
Chy03g01493 517 CDD LIM_DA1 153 205 - -
Chy03g01493 517 PANTHER PROTEIN DA1-LIKE 38 517 - -
Chy03g01493 517 Pfam Protein DA1 302 512 IPR022087 -
Chy03g01493 517 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 146 178 - -
Chy03g01493 517 ProSiteProfiles LIM domain profile. 151 211 IPR001781 -
Chy03g01493 517 ProSitePatterns LIM zinc-binding domain signature. 153 187 IPR001781 -
Chy03g01493 517 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 81 100 IPR003903 -
Chy03g01493 517 PANTHER PROTEIN DA1-RELATED 2 38 517 IPR045218 -
Chy03g01493 517 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 112 131 IPR003903 -
Chy03g01493 517 SMART uim 112 131 IPR003903 -
Chy03g01493 517 SMART uim 81 100 IPR003903 -
Chy03g01493 517 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 179 233 - -
Chy03g01493 517 Pfam LIM domain 153 207 IPR001781 -
Chy03g01493 517 SMART lim_4 152 204 IPR001781 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01493 - - - csv:101221261 1005.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00005 Chy-Chr1:38800 Chy03g01493 Chy-Chr3:17326689 1.65E-30 dispersed
Chy10g00510 Chy-Chr10:11594120 Chy03g01493 Chy-Chr3:17326689 0 transposed
Chy11g00170 Chy-Chr11:1650904 Chy03g01493 Chy-Chr3:17326689 0 transposed
Chy02g00964 Chy-Chr2:6421088 Chy03g01493 Chy-Chr3:17326689 2.05E-143 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g879 . . . . . . . . Cmo05g00224 Cmo12g00443 . . . Car12g00468 . . Cpe07g00446 Bhi04g00285 . . . . . . Cla08g01521 Cam08g2012 Cec08g1588 Cco08g1723 Clacu08g1701 . Cre08g1483 Cone4ag1886 Cone7ag1797 Cone17ag1316 Cone20ag0158 . . . Cme03g01987 Blo17g00819 . Bda08g01302 . . Bpe05g00075 . Bma05g00105 . . . Cma12g00498 Cma05g00218 Car05g00178 . Cpe11g00180 . . . . . . . . . . . . . . . Lsi08g01424 Csa02g02018 Chy03g01493 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001147 2 4 2 2 2 2 2 2 2 2 2 2 4 2 2 3 2 6 3 2 2 2 2 2 2 3 2 9 2 3 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17744 PF12315 DA1-like 1.30E-95 CL0126 Chy TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01493 Chy_Chr03 FPKM 0.0 0.0 2.724395 4.827095 1.564785 1.388572 1.314341 2.467178 2.104315 2.573908