Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01498 ATGAAATTTGGGAATCTCTTCACGGATAATTCCGATCTAAAAATAGACGACGATGGCGATTTTCCGACGCCAACCAGCGACGAGTCTCCGCCGATATTTTCACCGTGGAATCAGACTTATCCCTTTCTGAAATCTCCCTGTTTTTCCGAATTCCAAAACGGCTTAGTTCTTCACCGGAATAATATTAATGACAATAAAAATAATAGTGATTCTCTCATTGGGTCCCTTGTTCGTGAGGAAGGCCACGTGTACTCGCTAGCCACCGCCGGCGAGCTTCTCTACACCGGCTCCGACAGCAAAAACATTCGGGTATGGAAAAATCTCAAGGAATTTACTGGGTTTAAATCAAGCAGTGGATTGGTTAAGGCAATTATAATCTCCGGCGAAAAGATCTTCACCGGTCACCAGGACGGAAAAATTCGGGTCTGGAAAGTGGCACCGAAAAACCCAAGCGGCGGTCACCGACGGGCTGGGACGTTACCGGCGCTGAGAGATATTTTAAGAAGCTCCATGAACCCTCAAAACTACGTCGTTGTGGGACGGAATCGGAGCCGGCTTTGGTTTAAACACGCCGATGCAGTTTCGTGCTTGTGCTTGAGTGAAGATAAGACGTTATTGTATTCTTCTTCTTGGGATAAAACTTTGAAAGTTTGGAGAATTTCAGATTCCAAGTGCCTCGAATCACTTACTGTTCATGACGATGCAGTGAATGCCGTCGTCGCAGCTTCAAATGGTTTGGTCATCACTGGCTCAGCCGACGGCACCGCTAAGGTATGGCGGAGACAGCATGAAGAAGAGAACGACGCAACAAAACACGTACTGGACCAAACGCTTTTGAAGCAAGACAGTGCAGTTACAGCGGTGGCCGTCAACGCCGCCGGCACTGTAGTTTACTGTGGATCTTCCGACGGATTGGTCAACTTCTGGGAGCGAGAAAAGCGCTTGACATACGGTGGAGCCCTCAAGGGCCACAACCTAGCAGTTCTCTGCCTTGCTGCCGCCGGGAACAGCATGGTATTAAGCGGCGGCGCCGATAAAATCATATGCGTGTGGCGGAGGGATGGGCCTTTCCACACGTGCGTATCGGTGCTGACGGGTCACACCGGACCGGTTAAATGCTTAGCCGTGGAGGAAGATCGCGTCCGCTGCCCGGATAAACAGGGAGTTCAGCGATGGATTGCGTACAGTGGTAGCCTGGACAGATCGGTGAAGGTGTGGGGAATTCCCGACGGGGTCGGTGGGTGA 1245 50.68 MKFGNLFTDNSDLKIDDDGDFPTPTSDESPPIFSPWNQTYPFLKSPCFSEFQNGLVLHRNNINDNKNNSDSLIGSLVREEGHVYSLATAGELLYTGSDSKNIRVWKNLKEFTGFKSSSGLVKAIIISGEKIFTGHQDGKIRVWKVAPKNPSGGHRRAGTLPALRDILRSSMNPQNYVVVGRNRSRLWFKHADAVSCLCLSEDKTLLYSSSWDKTLKVWRISDSKCLESLTVHDDAVNAVVAASNGLVITGSADGTAKVWRRQHEEENDATKHVLDQTLLKQDSAVTAVAVNAAGTVVYCGSSDGLVNFWEREKRLTYGGALKGHNLAVLCLAAAGNSMVLSGGADKIICVWRRDGPFHTCVSVLTGHTGPVKCLAVEEDRVRCPDKQGVQRWIAYSGSLDRSVKVWGIPDGVGG* 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17357522 17359467 + Chy3G064780.1 Chy03g01498 223659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01498 414 MobiDBLite consensus disorder prediction 1 30 - -
Chy03g01498 414 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 259 - -
Chy03g01498 414 Pfam WD domain, G-beta repeat 321 351 IPR001680 GO:0005515
Chy03g01498 414 Pfam WD domain, G-beta repeat 105 144 IPR001680 GO:0005515
Chy03g01498 414 Pfam WD domain, G-beta repeat 224 259 IPR001680 GO:0005515
Chy03g01498 414 Pfam WD domain, G-beta repeat 359 406 IPR001680 GO:0005515
Chy03g01498 414 Pfam WD domain, G-beta repeat 190 218 IPR001680 GO:0005515
Chy03g01498 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 259 IPR001680 GO:0005515
Chy03g01498 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 310 IPR001680 GO:0005515
Chy03g01498 414 SMART WD40_4 69 106 IPR001680 GO:0005515
Chy03g01498 414 SMART WD40_4 357 407 IPR001680 GO:0005515
Chy03g01498 414 SMART WD40_4 181 219 IPR001680 GO:0005515
Chy03g01498 414 SMART WD40_4 314 352 IPR001680 GO:0005515
Chy03g01498 414 SMART WD40_4 107 144 IPR001680 GO:0005515
Chy03g01498 414 SMART WD40_4 271 310 IPR001680 GO:0005515
Chy03g01498 414 SMART WD40_4 222 260 IPR001680 GO:0005515
Chy03g01498 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 321 351 IPR001680 GO:0005515
Chy03g01498 414 Gene3D - 271 413 IPR015943 GO:0005515
Chy03g01498 414 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 25 409 IPR045182 -
Chy03g01498 414 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Chy03g01498 414 PRINTS G protein beta WD-40 repeat signature 247 261 IPR020472 -
Chy03g01498 414 PRINTS G protein beta WD-40 repeat signature 131 145 IPR020472 -
Chy03g01498 414 Gene3D - 61 160 IPR015943 GO:0005515
Chy03g01498 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Chy03g01498 414 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 224 - -
Chy03g01498 414 SUPERFAMILY WD40 repeat-like 76 411 IPR036322 GO:0005515
Chy03g01498 414 Gene3D - 177 270 IPR015943 GO:0005515
Chy03g01498 414 PANTHER PROTEIN JINGUBANG 25 409 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01498 - - - csv:101222126 796.578
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy03g01498 Chy04g00544 CCT
Chy03g01498 Chy04g00544 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01498 Chy-Chr3:17357522 Chy11g00145 Chy-Chr11:1490771 1.72E-161 dispersed
Chy03g01498 Chy-Chr3:17357522 Chy04g00544 Chy-Chr4:5497331 7.57E-179 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g860 Blo01g01543 Blo12g00920 Bda01g00554 Bda03g00243 Bpe02g00412 . Bma04g00193 . Cmo05g00221 Cmo12g00448 . Cma09g00180 . . Sed10g2068 . . Bhi04g00295 Tan02g0857 Cmetu01g0434 . Hepe02g0551 . . Cla08g01527 Cam08g2019 Cec08g1593 Cco08g1730 Clacu08g1708 . Cre08g1489 . . . . . Csa03g04173 Chy04g00544 . Blo17g00826 . Bda08g01311 . . . . Bma05g00099 . Cmo01g01944 Cmo09g00176 Cma12g00505 Cma05g00214 . . . . . . . . . . . Cla05g01970 Cam05g2121 Cec05g2132 Cco05g2184 Clacu05g2109 Cmu05g1985 Cre05g2104 . Csa02g02011 Chy03g01498 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013246 2 1 1 1 1 1 0 1 1 1 1 1 2 0 1 2 1 0 0 1 1 1 1 1 0 0 1 2 1 0 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01498 Chy_Chr03 FPKM 1.616667 0.500239 0.0 1.410046 1.916779 3.472731 0.0 0.794348 0.602819 0.0