Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01499 ATGGGATTTGGATCAATTAAAAGAAGCATTAGAGCTCCAAGAATGAGATGGACTACTACTCTCCATGCCCATTTTGTCCACGCCGTTCAGCTCCTTGGTGGCCATGAAAGGGCAACACCAAAATCAGTATTGGAGCTGATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGCCATTTACAGATGTATAGAACAGTGAAAAGCACTGACAAAGCCACTGACTCAGCCATGAAGAACCAAAGGCAAGAAATTGATGGAAGTGGTGTTTCAAATTGTGAGATTTCTAATAACCCATCACTTACAATGTGGAAAAGCCCTAATCAAAAAATGAAGTTGTTCTGTTCATCAATGGAGACAAATCAAGAGATGACGAGCAGATGGAATCAATTTTGCAACAACACTATTGGAAACAACCAGCAGCAGCAAGAGAAGGACAGACACAATGGAAATGCAAATATGAAAATCTCGAGTGGTACATCTGTCGGCTGTACCGAACAATGTTACATATCTATCTATGATTACATGTTGTTTATATGTTGCACTGACTAA 552 39.86 MGFGSIKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKATDSAMKNQRQEIDGSGVSNCEISNNPSLTMWKSPNQKMKLFCSSMETNQEMTSRWNQFCNNTIGNNQQQQEKDRHNGNANMKISSGTSVGCTEQCYISIYDYMLFICCTD* 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17359749 17363386 - Chy3G064790.1 Chy03g01499 223660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01499 183 SUPERFAMILY Homeodomain-like 10 67 IPR009057 -
Chy03g01499 183 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 5 157 - -
Chy03g01499 183 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 13 66 IPR006447 GO:0003677
Chy03g01499 183 Pfam Myb-like DNA-binding domain 14 65 IPR001005 -
Chy03g01499 183 Gene3D - 12 69 - -
Chy03g01499 183 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 5 157 IPR044847 GO:0000976|GO:0006355|GO:0010158
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy03g01499 Chy04g00565 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01499 Chy-Chr3:17359749 Chy04g00122 Chy-Chr4:1103395 3.19E-39 dispersed
Chy02g00226 Chy-Chr2:1514364 Chy03g01499 Chy-Chr3:17359749 1.60E-25 transposed
Chy02g00410 Chy-Chr2:2577130 Chy03g01499 Chy-Chr3:17359749 2.44E-19 transposed
Chy03g01499 Chy-Chr3:17359749 Chy04g00565 Chy-Chr4:5954219 2.65E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17745 PF00249 Myb_DNA-binding 5.30E-06 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01499 - - csv:101219131 321.242