Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01523 ATGGGAATCTCAAACCTCTCATACGAGGAATGTCGTCAGAAAAGAGTTGAAGAAAACAAGAAGAGAATGGAAGCCCTAAATTTGCCCTTACTTTCTCAAGCTCTCCTCGATTCTTCCCCTTCCAAGTCCTCCCCTAGTAAGCAGGTCAAGCCTCGCGTGATGCAGAAACAACTGTTGGTGGTGAGGAGGTCCAGTCGCGTAGCAAAGCAACCAACGCCTGTTTACGCTGAAGTTCTTGTCGATCGTATGGCGATTCCTAGAAGGATCTCCAGAGCAAGAGATTTTTCAGCCCAGTTTTATGCTTCGGATGAAACAAGAAAAAAAGCCTTTGAAAGAGCTCTTGAGTTACAATCTGGATTGGAGCCGAATTATCCCAGCTGTATAAAGTCGATGGTTCGGTCTCATGTTAGTGGTTGTTTCTGGCTGGGCCTTCCTTCTCATTTCTGCAAGACGCACCTTCCAAAGAATGATGGAGTAATGACTTTAATAGATGAAGATGGTGATGAGTATCCAATAATATATTTGGCACGAAAAACAGGATTTAGTGGTGGATGGAAGGGTTTTTCAATTGCTCATAAGTTAGCTGATGGAGATGCTGTGGTTTTTCAACACATTAAACCTACAGCCTGCAAGGTGTACATCTTTAGAGCGAATGGTTCCAAAGAAGATAGTGATTCTAACAATAGCTAA 690 43.04 MGISNLSYEECRQKRVEENKKRMEALNLPLLSQALLDSSPSKSSPSKQVKPRVMQKQLLVVRRSSRVAKQPTPVYAEVLVDRMAIPRRISRARDFSAQFYASDETRKKAFERALELQSGLEPNYPSCIKSMVRSHVSGCFWLGLPSHFCKTHLPKNDGVMTLIDEDGDEYPIIYLARKTGFSGGWKGFSIAHKLADGDAVVFQHIKPTACKVYIFRANGSKEDSDSNNS* 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17501677 17503266 + Chy3G065030.1 Chy03g01523 223684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01523 229 SMART B3_2 127 218 IPR003340 GO:0003677
Chy03g01523 229 Gene3D - 102 219 IPR015300 -
Chy03g01523 229 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 1 222 IPR044837 -
Chy03g01523 229 SUPERFAMILY DNA-binding pseudobarrel domain 121 219 IPR015300 -
Chy03g01523 229 CDD B3_DNA 125 216 IPR003340 GO:0003677
Chy03g01523 229 PANTHER B3 DOMAIN-CONTAINING PROTEIN 1 222 - -
Chy03g01523 229 Pfam B3 DNA binding domain 128 217 IPR003340 GO:0003677
Chy03g01523 229 ProSiteProfiles B3 DNA-binding domain profile. 127 218 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01523 Chy-Chr3:17501677 Chy06g01091 Chy-Chr6:9106154 4.13E-44 dispersed
Chy03g01523 Chy-Chr3:17501677 Chy03g01525 Chy-Chr3:17505321 2.16E-133 proximal
Chy01g00047 Chy-Chr1:341056 Chy03g01523 Chy-Chr3:17501677 2.00E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17749 PF02362 B3 3.90E-13 CL0405 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01523 - - csv:101205233 353.599