Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01525 ATGCAAAACTCAGTCGTTTCTGTTATTCATCTTCTCCCTGTTTCCATTTCGCACACACTCCAAACCCTACGAACCGAGGAGGAAGAAGAAGAGACAATGGGGATCGCAAACCTCTCGTATGAGGAATGTCGTCGCAAGAGACTCGAAGAAAACAAGAAGCGAATGGAAGCCTTAAACTTGCCCTTGCTTTCTCAAGCTCTCATCGATTCTTCCCCTTCCAAGTCCTCACCTAGTAAGCTCACCAAGCCTCGCGTGACTCAGAAACAACTCGTGGTGGTGAGGAGATCCAGTCGAGTAGCTAAACAGTCAGCTCCTGTTTACGCCGAAGTTGTTATTAATCGCGTGGTGATTCCTAGAAGGATCTCTAAAGCTAGAGATTTATCAAATCGAGTTTATGCTTCGGATGAAGCAAGAAAAGAAGTTTTTGAAAGAGCTGAACAATTGCAATCTGGGTTGGAGCCGAATTATCCCAGTTTTATAAAGTCAATGCTTCAGTCTCATGTTAGTGGTGGATTCTGGCTGGGTCTTCCTTCTCATTTCTGCAAGATTCACCTTCCAAATCGTGATGGAGTAATGACTTTAATAGATGAAGATGGTGATGAGTATCCGACAATATATTTAGCACGAAAAACAGGACTTAGTGGCGGATGGAAGGGTTTTGCAGTCGCTCATAAGTTGGCAGATGGGGATGCTGTGATTTTTCAATTCATTAAACCTACAACATGCAAGGTGCACATTCTCAGGACCAACAGTTCCAGAGAAGATAGCGATTCTAACAGTAGCTAA 786 43.64 MQNSVVSVIHLLPVSISHTLQTLRTEEEEEETMGIANLSYEECRRKRLEENKKRMEALNLPLLSQALIDSSPSKSSPSKLTKPRVTQKQLVVVRRSSRVAKQSAPVYAEVVINRVVIPRRISKARDLSNRVYASDEARKEVFERAEQLQSGLEPNYPSFIKSMLQSHVSGGFWLGLPSHFCKIHLPNRDGVMTLIDEDGDEYPTIYLARKTGLSGGWKGFAVAHKLADGDAVIFQFIKPTTCKVHILRTNSSREDSDSNSS* 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17505321 17507162 + Chy3G065050.1 Chy03g01525 223686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01525 261 SUPERFAMILY DNA-binding pseudobarrel domain 153 250 IPR015300 -
Chy03g01525 261 CDD B3_DNA 157 248 IPR003340 GO:0003677
Chy03g01525 261 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 34 254 IPR044837 -
Chy03g01525 261 SMART B3_2 159 250 IPR003340 GO:0003677
Chy03g01525 261 Pfam B3 DNA binding domain 159 249 IPR003340 GO:0003677
Chy03g01525 261 Gene3D - 133 251 IPR015300 -
Chy03g01525 261 ProSiteProfiles B3 DNA-binding domain profile. 159 250 IPR003340 GO:0003677
Chy03g01525 261 Coils Coil 38 58 - -
Chy03g01525 261 PANTHER B3 DOMAIN-CONTAINING PROTEIN 34 254 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00047 Chy-Chr1:341056 Chy03g01525 Chy-Chr3:17505321 2.20E-80 dispersed
Chy03g01525 Chy-Chr3:17505321 Chy06g01091 Chy-Chr6:9106154 3.80E-45 dispersed
Chy03g01523 Chy-Chr3:17501677 Chy03g01525 Chy-Chr3:17505321 2.16E-133 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17750 PF02362 B3 1.80E-13 CL0405 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01525 - - csv:101205473 409.453