Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01549 ATGAATTTCAAAGATTTTGGGAATGACCCATCTGGCGGGAACGGAGGCGGAGGTGGAAGGCCTCCGGCGAACTATCCATTAGCGCGACAATCATCGATCTACTCAATGACCTTCGATGAGTTTCAAAGCATGGGGAGTATAGGAAAGGACTTTGGGTCAATGAACATGGATGAGCTGTTGAAGAACATTTGGAGCGCTGAAGAAATGCAAACAATGGCATCTTCTGCTGCTGCTGTTGGTAAAGAAGGGGGTGGTAGTGCTGGTGGTAGTAGTGGTTATTTGCAGAGACAGGGGTCTTTGACGCTGCCTCGAACACTCAGCCAGAAGAAGGTGGATGAGGTATGGAAGGACATAATCAATGAACATGCTAGTGCTAAAGACGGGGCTGCCCTTGCTCCTAATTTGCAACAGAGGCAGCAAACTCTTGGGGAGGTGACCCTGGAAGAGTTTTTACTCAGAGCTGGAGTGGTGAGAGAGGATACTCAAGTGACAGCAAACCCCAACAATGGAGGGTTCTTCGGCAATAATACCGGTTTTGGAATTGCTTTTCAGCGGCAGCCGAAAGTTCCTGAGAATAACAATCACATTCAGATTCAATCGTCGAACTTATCGCTGAATGCCAATGGAGTTCGAGCACATCAGCCGCAGCCAATATTTCCAAAGCAGGCGACTTTGACATATGGATCTCAGTTGGCTTTACCCAGTGATGGTCAGCTGGTTAGTCCAGGAATTAGAGGTGGAATTATGGGGATTGCAGATCAAGGGCTGAATACAAATTTGATGCAAGGCTCTGCACTGCAGGGTGGAAGAATGGGAGTGGTCAATATAGCAGCTGCTCCGTTACCTATTGCCACAGAATCGCCAGGGAACCAACTATCCTCTGATGGAATCGGAAAGAGCAATGGTGATACCTCTTCAGTGTCTCCTGTGCCTTACGCGCTTAATGGTGGAATCAGGGGGCGGAGAGGTAATGGGATTGTCGACAAAGTTGTTGAGAGGAGGCAACGGAGAATGATTAAAAACAGAGAGTCTGCTGCAAGATCACGGGCGCGAAAGCAGGCTTACACAATGGAATTGGAAGCAGAAGTTGCAAAGCTAAAAGAGGAGAACCAAGAACTCCGGCAGAAACAGGCAGAAATCATGGAAATGCAGAAGAACCGGGCATTGGAAGTAATGGATAAGCAACAAGGAATCAAGAAGCGATGTTTAAGACGAACGCAGACTGGCCCATG 1232 47.97 MNFKDFGNDPSGGNGGGGGRPPANYPLARQSSIYSMTFDEFQSMGSIGKDFGSMNMDELLKNIWSAEEMQTMASSAAAVGKEGGGSAGGSSGYLQRQGSLTLPRTLSQKKVDEVWKDIINEHASAKDGAALAPNLQQRQQTLGEVTLEEFLLRAGVVREDTQVTANPNNGGFFGNNTGFGIAFQRQPKVPENNNHIQIQSSNLSLNANGVRAHQPQPIFPKQATLTYGSQLALPSDGQLVSPGIRGGIMGIADQGLNTNLMQGSALQGGRMGVVNIAAAPLPIATESPGNQLSSDGIGKSNGDTSSVSPVPYALNGGIRGRRGNGIVDKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELRQKQAEIMEMQKNRALEVMDKQQGIKKRCLRRTQTGPX 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17666168 17668972 + Chy3G065290.1 Chy03g01549 223710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01549 411 Pfam bZIP transcription factor 333 385 IPR004827 GO:0003700|GO:0006355
Chy03g01549 411 CDD bZIP_plant_BZIP46 333 385 - -
Chy03g01549 411 SUPERFAMILY Leucine zipper domain 333 381 IPR046347 GO:0003700|GO:0006355
Chy03g01549 411 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 336 351 IPR004827 GO:0003700|GO:0006355
Chy03g01549 411 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 331 382 IPR004827 GO:0003700|GO:0006355
Chy03g01549 411 Coils Coil 349 386 - -
Chy03g01549 411 MobiDBLite consensus disorder prediction 287 311 - -
Chy03g01549 411 Gene3D - 331 388 - -
Chy03g01549 411 SMART brlzneu 329 393 IPR004827 GO:0003700|GO:0006355
Chy03g01549 411 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 199 410 IPR043452 GO:0003700|GO:0045893
Chy03g01549 411 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 5 174 IPR043452 GO:0003700|GO:0045893
Chy03g01549 411 MobiDBLite consensus disorder prediction 287 315 - -
Chy03g01549 411 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 5 174 - -
Chy03g01549 411 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 199 410 - -
Chy03g01549 411 MobiDBLite consensus disorder prediction 1 27 - -
Chy03g01549 411 MobiDBLite consensus disorder prediction 76 96 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01549 K14432 ABF; ABA responsive element binding factor - csv:101223043 727.628
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01358 Chy-Chr2:10145980 Chy03g01549 Chy-Chr3:17666168 2.09E-11 dispersed
Chy03g01549 Chy-Chr3:17666168 Chy04g01934 Chy-Chr4:25267969 6.38E-56 dispersed
Chy06g02250 Chy-Chr6:26547626 Chy03g01549 Chy-Chr3:17666168 3.35E-17 transposed
Chy01g00061 Chy-Chr1:447463 Chy03g01549 Chy-Chr3:17666168 2.44E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g759 Blo01g01529 . . Bda03g00211 . . Bma04g00163 Bma01g02274 Cmo05g00179 Cmo12g00499 . . . Car12g00510 Sed10g2023 . Cpe07g00488 Bhi04g00358 Tan02g0922 Cmetu01g1641 . Hepe08g1288 . Lcy13g2085 Cla08g01575 . Cec08g1653 Cco08g1784 Clacu08g1760 . Cre08g1544 . . . . . . . Cme03g02053 . . . Bda01g01610 Bpe02g01800 . . . . . . . Cma05g00180 Car05g00153 . Cpe11g00148 . . . . . . . . . . . . . . . . Csa02g01943 Chy03g01549 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy03g01222 . 88 323 bZIP Transcription Factor Family AT5G24800 50.6 2.3e-45 179.5
Chy06g02175 CCT 34 349 bZIP Transcription Factor Family AT2G35530 67.8 6.6e-105 377.9
Chy04g00130 CCT 1 344 bZIP Transcription Factor Family AT2G35530 61.7 4.9e-100 361.7
Chy10g00314 . 16 325 bZIP Transcription Factor Family AT2G40620 59.3 1.5e-84 310.1
Chy11g01164 . 65 397 bZIP Transcription Factor Family AT2G40620 50.3 1.8e-69 260.0
Chy03g00519 . 170 321 bZIP Transcription Factor Family AT2G40620 65.8 1.9e-42 170.2
Chy01g00730 . 384 518 bZIP Transcription Factor Family AT2G40620 67.1 2.8e-38 156.4
Chy11g00253 CCT 1 233 bZIP Transcription Factor Family AT4G35040 62.6 3.3e-65 245.4
Chy01g00682 CCT 1 265 bZIP Transcription Factor Family AT4G35040 58.2 3.2e-60 228.8
Chy03g00855 CCT 6 334 bZIP Transcription Factor Family AT5G06950 80.7 8.7e-140 493.4
Chy10g01378 CCT 21 352 bZIP Transcription Factor Family AT5G06950 75.9 1.3e-130 463.0
Chy04g01664 . 136 468 bZIP Transcription Factor Family AT5G06950 73.0 8.2e-122 433.7
Chy03g00328 . 392 724 bZIP Transcription Factor Family AT5G06950 69.9 7.1e-118 420.6
Chy04g01760 . 146 440 bZIP Transcription Factor Family AT5G06950 60.6 3.9e-92 335.1
Chy07g01307 . 78 360 bZIP Transcription Factor Family AT5G06950 54.7 1.2e-75 280.4
Chy03g00061 . 107 412 bZIP Transcription Factor Family AT5G06950 50.6 1.6e-72 270.0
Chy11g00902 . 384 625 bZIP Transcription Factor Family AT5G06950 54.8 2.0e-67 253.1
Chy03g00855 CCT 46 333 bZIP Transcription Factor Family AT1G08320 63.2 4.0e-98 355.1
Chy04g01760 . 123 440 bZIP Transcription Factor Family AT1G08320 58.8 8.3e-96 347.4
Chy04g01664 . 177 467 bZIP Transcription Factor Family AT1G08320 60.8 5.0e-93 338.2
Chy10g01378 CCT 64 351 bZIP Transcription Factor Family AT1G08320 60.4 1.2e-91 333.6
Chy03g00328 . 430 723 bZIP Transcription Factor Family AT1G08320 58.2 6.8e-90 327.8
Chy11g00902 . 382 623 bZIP Transcription Factor Family AT1G08320 64.5 2.0e-81 299.7
Chy11g00253 CCT 1 260 bZIP Transcription Factor Family AT2G16770 59.0 1.5e-64 243.0
Chy01g00682 CCT 1 265 bZIP Transcription Factor Family AT2G16770 57.5 2.5e-62 235.7
Chy03g00855 CCT 25 334 bZIP Transcription Factor Family AT5G06960 81.0 1.3e-129 459.5
Chy10g01378 CCT 52 352 bZIP Transcription Factor Family AT5G06960 77.1 9.4e-120 426.8
Chy04g01664 . 157 468 bZIP Transcription Factor Family AT5G06960 70.9 2.3e-110 395.6
Chy03g00328 . 418 724 bZIP Transcription Factor Family AT5G06960 68.4 2.0e-106 382.5
Chy04g01760 . 132 440 bZIP Transcription Factor Family AT5G06960 59.9 2.0e-90 329.3
Chy07g01307 . 53 360 bZIP Transcription Factor Family AT5G06960 51.9 7.8e-74 274.2
Chy11g00902 . 384 625 bZIP Transcription Factor Family AT5G06960 54.8 4.9e-68 255.0
Chy01g00730 . 1 566 bZIP Transcription Factor Family AT4G38900 56.5 5.8e-133 471.5
Chy03g00519 . 115 306 bZIP Transcription Factor Family AT4G38900 54.4 1.4e-38 157.9
Chy01g01284 . 101 282 bZIP Transcription Factor Family AT4G38900 55.4 2.7e-37 153.7
Chy10g00314 . 123 237 bZIP Transcription Factor Family AT4G38900 76.5 7.8e-37 152.1
Chy01g01284 . 101 282 bZIP Transcription Factor Family AT2G21230 56.8 5.2e-38 156.0
Chy01g00455 CCT,ECH 1 263 bZIP Transcription Factor Family AT2G42380 58.2 5.5e-68 254.6
Chy03g01549 . 27 353 bZIP Transcription Factor Family AT1G45249 55.8 1.9e-83 306.6
Chy03g00502 . 67 259 bZIP Transcription Factor Family AT1G03970 56.2 3.8e-40 162.2
Chy03g00855 CCT 6 334 bZIP Transcription Factor Family AT3G12250 80.9 1.5e-139 492.7
Chy10g01378 CCT 21 352 bZIP Transcription Factor Family AT3G12250 75.6 1.4e-129 459.5
Chy04g01664 . 136 468 bZIP Transcription Factor Family AT3G12250 73.4 1.1e-121 433.3
Chy03g00328 . 392 724 bZIP Transcription Factor Family AT3G12250 69.1 2.3e-116 415.6
Chy04g01760 . 146 440 bZIP Transcription Factor Family AT3G12250 59.9 4.4e-91 331.6
Chy07g01307 . 47 360 bZIP Transcription Factor Family AT3G12250 52.1 5.2e-76 281.6
Chy11g00902 . 384 625 bZIP Transcription Factor Family AT3G12250 56.0 1.0e-68 257.3
Chy03g00328 . 272 724 bZIP Transcription Factor Family AT1G68640 62.6 1.4e-143 506.5
Chy03g00855 CCT 6 334 bZIP Transcription Factor Family AT1G68640 67.5 1.2e-115 413.7
Chy04g01664 . 134 468 bZIP Transcription Factor Family AT1G68640 66.0 1.0e-111 400.6
Chy10g01378 CCT 18 352 bZIP Transcription Factor Family AT1G68640 64.2 1.7e-109 393.3
Chy04g01760 . 134 440 bZIP Transcription Factor Family AT1G68640 55.3 4.0e-87 318.9
Chy03g00519 . 31 345 bZIP Transcription Factor Family AT1G43700 53.8 9.2e-68 254.2
Chy01g01284 . 12 293 bZIP Transcription Factor Family AT1G43700 52.1 2.8e-64 242.7
Chy06g00123 . 11 421 bZIP Transcription Factor Family AT2G46270 50.1 1.1e-79 293.9
Chy06g00824 . 42 383 bZIP Transcription Factor Family AT2G31370 66.0 1.2e-106 383.6
Chy06g00833 . 45 360 bZIP Transcription Factor Family AT2G31370 67.0 1.0e-102 370.5
Chy10g00314 . 25 248 bZIP Transcription Factor Family AT2G31370 52.2 3.2e-48 189.5
Chy01g00455 CCT,ECH 1 263 bZIP Transcription Factor Family AT3G58120 52.4 2.0e-63 239.6
Chy06g02175 CCT 27 351 bZIP Transcription Factor Family AT1G32150 65.5 1.4e-99 360.1
Chy04g00130 CCT 1 345 bZIP Transcription Factor Family AT1G32150 60.2 9.1e-96 347.4
Chy06g00824 . 10 379 bZIP Transcription Factor Family AT1G06070 65.1 2.8e-119 425.6
Chy06g00833 . 1 359 bZIP Transcription Factor Family AT1G06070 68.0 1.4e-118 423.3
Chy01g00730 . 382 526 bZIP Transcription Factor Family AT1G06070 64.6 3.2e-38 156.4
Chy03g01549 . 27 353 bZIP Transcription Factor Family AT1G45249 55.8 1.9e-83 306.6
Chy06g02175 CCT 34 349 bZIP Transcription Factor Family AT2G35530 67.8 6.6e-105 377.9
Chy04g00130 CCT 1 344 bZIP Transcription Factor Family AT2G35530 61.7 4.9e-100 361.7
Chy10g00314 . 16 325 bZIP Transcription Factor Family AT2G40620 59.3 1.5e-84 310.1
Chy11g01164 . 65 397 bZIP Transcription Factor Family AT2G40620 50.3 1.8e-69 260.0
Chy03g00519 . 170 321 bZIP Transcription Factor Family AT2G40620 65.8 1.9e-42 170.2
Chy01g00730 . 384 518 bZIP Transcription Factor Family AT2G40620 67.1 2.8e-38 156.4
Chy11g00253 CCT 1 233 bZIP Transcription Factor Family AT4G35040 62.6 3.3e-65 245.4
Chy01g00682 CCT 1 265 bZIP Transcription Factor Family AT4G35040 58.2 3.2e-60 228.8
Chy03g00855 CCT 6 334 bZIP Transcription Factor Family AT5G06950 80.7 8.7e-140 493.4
Chy10g01378 CCT 21 352 bZIP Transcription Factor Family AT5G06950 75.9 1.3e-130 463.0
Chy04g01664 . 136 468 bZIP Transcription Factor Family AT5G06950 73.0 8.2e-122 433.7
Chy03g00328 . 392 724 bZIP Transcription Factor Family AT5G06950 69.9 7.1e-118 420.6
Chy04g01760 . 146 440 bZIP Transcription Factor Family AT5G06950 60.6 3.9e-92 335.1
Chy07g01307 . 78 360 bZIP Transcription Factor Family AT5G06950 54.7 1.2e-75 280.4
Chy03g00061 . 107 412 bZIP Transcription Factor Family AT5G06950 50.6 1.6e-72 270.0
Chy11g00902 . 384 625 bZIP Transcription Factor Family AT5G06950 54.8 2.0e-67 253.1
Chy03g00855 CCT 46 333 bZIP Transcription Factor Family AT1G08320 63.2 4.0e-98 355.1
Chy04g01760 . 123 440 bZIP Transcription Factor Family AT1G08320 58.8 8.3e-96 347.4
Chy04g01664 . 177 467 bZIP Transcription Factor Family AT1G08320 60.8 5.0e-93 338.2
Chy10g01378 CCT 64 351 bZIP Transcription Factor Family AT1G08320 60.4 1.2e-91 333.6
Chy03g00328 . 430 723 bZIP Transcription Factor Family AT1G08320 58.2 6.8e-90 327.8
Chy11g00902 . 382 623 bZIP Transcription Factor Family AT1G08320 64.5 2.0e-81 299.7
Chy11g00253 CCT 1 260 bZIP Transcription Factor Family AT2G16770 59.0 1.5e-64 243.0
Chy01g00682 CCT 1 265 bZIP Transcription Factor Family AT2G16770 57.5 2.5e-62 235.7
Chy03g00855 CCT 25 334 bZIP Transcription Factor Family AT5G06960 81.0 1.3e-129 459.5
Chy10g01378 CCT 52 352 bZIP Transcription Factor Family AT5G06960 77.1 9.4e-120 426.8
Chy04g01664 . 157 468 bZIP Transcription Factor Family AT5G06960 70.9 2.3e-110 395.6
Chy03g00328 . 418 724 bZIP Transcription Factor Family AT5G06960 68.4 2.0e-106 382.5
Chy04g01760 . 132 440 bZIP Transcription Factor Family AT5G06960 59.9 2.0e-90 329.3
Chy07g01307 . 53 360 bZIP Transcription Factor Family AT5G06960 51.9 7.8e-74 274.2
Chy11g00902 . 384 625 bZIP Transcription Factor Family AT5G06960 54.8 4.9e-68 255.0
Chy01g00730 . 1 566 bZIP Transcription Factor Family AT4G38900 56.5 5.8e-133 471.5
Chy03g00519 . 115 306 bZIP Transcription Factor Family AT4G38900 54.4 1.4e-38 157.9
Chy01g01284 . 101 282 bZIP Transcription Factor Family AT4G38900 55.4 2.7e-37 153.7
Chy10g00314 . 123 237 bZIP Transcription Factor Family AT4G38900 76.5 7.8e-37 152.1
Chy01g01284 . 101 282 bZIP Transcription Factor Family AT2G21230 56.8 5.2e-38 156.0
Chy01g00455 CCT,ECH 1 263 bZIP Transcription Factor Family AT2G42380 58.2 5.5e-68 254.6
Chy03g00502 . 67 259 bZIP Transcription Factor Family AT1G03970 56.2 3.8e-40 162.2
Chy03g00855 CCT 6 334 bZIP Transcription Factor Family AT3G12250 80.9 1.5e-139 492.7
Chy10g01378 CCT 21 352 bZIP Transcription Factor Family AT3G12250 75.6 1.4e-129 459.5
Chy04g01664 . 136 468 bZIP Transcription Factor Family AT3G12250 73.4 1.1e-121 433.3
Chy03g00328 . 392 724 bZIP Transcription Factor Family AT3G12250 69.1 2.3e-116 415.6
Chy04g01760 . 146 440 bZIP Transcription Factor Family AT3G12250 59.9 4.4e-91 331.6
Chy07g01307 . 47 360 bZIP Transcription Factor Family AT3G12250 52.1 5.2e-76 281.6
Chy11g00902 . 384 625 bZIP Transcription Factor Family AT3G12250 56.0 1.0e-68 257.3
Chy03g00328 . 272 724 bZIP Transcription Factor Family AT1G68640 62.6 1.4e-143 506.5
Chy03g00855 CCT 6 334 bZIP Transcription Factor Family AT1G68640 67.5 1.2e-115 413.7
Chy04g01664 . 134 468 bZIP Transcription Factor Family AT1G68640 66.0 1.0e-111 400.6
Chy10g01378 CCT 18 352 bZIP Transcription Factor Family AT1G68640 64.2 1.7e-109 393.3
Chy04g01760 . 134 440 bZIP Transcription Factor Family AT1G68640 55.3 4.0e-87 318.9
Chy03g00519 . 31 345 bZIP Transcription Factor Family AT1G43700 53.8 9.2e-68 254.2
Chy01g01284 . 12 293 bZIP Transcription Factor Family AT1G43700 52.1 2.8e-64 242.7
Chy06g00123 . 11 421 bZIP Transcription Factor Family AT2G46270 50.1 1.1e-79 293.9
Chy06g00824 . 42 383 bZIP Transcription Factor Family AT2G31370 66.0 1.2e-106 383.6
Chy06g00833 . 45 360 bZIP Transcription Factor Family AT2G31370 67.0 1.0e-102 370.5
Chy10g00314 . 25 248 bZIP Transcription Factor Family AT2G31370 52.2 3.2e-48 189.5
Chy01g00455 CCT,ECH 1 263 bZIP Transcription Factor Family AT3G58120 52.4 2.0e-63 239.6
Chy06g02175 CCT 27 351 bZIP Transcription Factor Family AT1G32150 65.5 1.4e-99 360.1
Chy04g00130 CCT 1 345 bZIP Transcription Factor Family AT1G32150 60.2 9.1e-96 347.4
Chy06g00824 . 10 379 bZIP Transcription Factor Family AT1G06070 65.1 2.8e-119 425.6
Chy06g00833 . 1 359 bZIP Transcription Factor Family AT1G06070 68.0 1.4e-118 423.3
Chy01g00730 . 382 526 bZIP Transcription Factor Family AT1G06070 64.6 3.2e-38 156.4
Chy03g01222 . 88 323 bZIP Transcription Factor Family AT5G24800 50.6 2.3e-45 179.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004657 2 1 2 3 1 0 2 1 1 1 1 1 0 1 1 2 1 3 2 1 1 2 1 1 1 0 1 6 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17751 PF00170 bZIP_1 3.80E-13 CL0018 Chy TF