Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01551 ATGGATATTGAGGAGATGGGAAAGTTTGGAGAGAATTTTGAATATAATGAAATTGCAACTAGTTTGGATTTTGGTTTTGGTAGTTCCAATATTACTTCCACTTCACATCCTATTTTTCCTTCTTTTAATAATATCCCACCAACCACTCTTTCTATGAATAACGCCACTCACGCTGTTGCACCGCCGTCTTTTCCGCCCTATTCCGCCGCTGCCCGGTGGAGATCCCATTTTCCAGCCGCCCGAAATTCCGGCATGGCAGGGGAGGAGGAAGTGGAAGGATCAGAATCAGAATCAATGGGGGGAGGGATGAGAGAGATGATATACAGAATAGCAGCAATGCAGCCAATAGAGATAGACCCAGAAGCAGTGAAGGCACCAAAGCGACGGAATGTTAAGATTTCAAAAGATCCACAGAGCGTAGCGGCACGGCATAGACGAGAGAGAATTAGCGAAAGAATCAGAATTCTTCAAAGAATAGTCCCTGGTGGCACCAAAATGGACACCGCTTCCATGTTAGACGAAGCCATTCATTACCTTAAGTTTTTGAAAAACCAACTCCATTCACTCCAAATCGCCGCCGCCTCCTCCTCCTCCTCCGCCTACGCCTTTCCCACCGTCGCTCATTACAATAATAAACAACAAAACTTGATCCACTTTCCTCAATTGCCAACTCATCCACATCACCACCTGAACCAAGATGCTTGA 705 45.67 MDIEEMGKFGENFEYNEIATSLDFGFGSSNITSTSHPIFPSFNNIPPTTLSMNNATHAVAPPSFPPYSAAARWRSHFPAARNSGMAGEEEVEGSESESMGGGMREMIYRIAAMQPIEIDPEAVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYLKFLKNQLHSLQIAAASSSSSAYAFPTVAHYNNKQQNLIHFPQLPTHPHHHLNQDA* 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17678636 17679599 - Chy3G065310.1 Chy03g01551 223712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01551 234 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 37 217 - -
Chy03g01551 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 182 IPR011598 GO:0046983
Chy03g01551 234 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 37 217 IPR045843 GO:0003700|GO:0006355
Chy03g01551 234 SMART finulus 139 188 IPR011598 GO:0046983
Chy03g01551 234 Pfam Helix-loop-helix DNA-binding domain 143 182 IPR011598 GO:0046983
Chy03g01551 234 Gene3D - 129 192 IPR036638 GO:0046983
Chy03g01551 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 192 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01551 Chy-Chr3:17678636 Chy11g00181 Chy-Chr11:1770895 2.22E-52 dispersed
Chy03g01551 Chy-Chr3:17678636 Chy07g00141 Chy-Chr7:1201275 9.78E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17752 PF00010 HLH 9.60E-07 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01551 - - csv:105434749 406.371