Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01553 ATGCACGCTAAAACCGACTCCGAAGTCACCAGTATCGCCCCTTCTTCTCCGACGAGATCTCCTCGCCGTCCTGTCTACTTCGTCCAGAGCCCTTCCAGAGACTCACACGATGGGGAGAAGACTGCCACCTCCTTTCACTCTACTCCTGTTCTCACTAGTCCCATGGACTCCCCTCCCCATTCTCGCTCCTCCGTCGGCCGTCACTCTCGAGAATCTTCCTCCAGTAGGTTTTCTGGATCTCTTAAACCTGGATCCAGGAAGATCACTCCTAATGACGTCTCTCGCGGGGCCCATCGGAAGGGTCAGAAGCCATGGAAGGAATGCGATGTGATCGAAGAGGAAGGTCTTCTTGAAGATGAAGATCGGGGAAAATCTCTTCCTCGTCGCTGTTATGTTCTCGCTTTCATTTTGGGATTTGTTGTTCTTTTCTCTATGTTTGCTTTGATGCTTTGGGGTGCTAGTAGGCCGATGAAGCCCAAGATCACTATGAAGAGCATTACATTCGAGCAATTCAAAATCCAAGCCGGTTCCGATTTTACGGGCGTCGCCACTGATATGGCTTCCGTAAATTCAACTGTGAAACTCATTTTTCGAAACACCGGATCATTCTTCGGCGTCCACGTCTCTCCAACTCCCGTCGATTTATCATATTCCGAAATCACAGTCGCGTCAGGAACCGTTAAAAAGTTCTATCAATCACGGAAGAGTCATAGATCTCTGACAATCAATGTAATCGGCACCAGAGTCCCACTGTACGGAAGTGGAGCAAGTCTGAGCAGTTCCACTGGAACCCCCGAAACTCCATTGCCGTTGAAACTGAGATTCGTGATCAGATCCAGAGCCTACGTGTTGGGCCAATTAGTGAAGCCAAAATTCTACAGACACATCGATTGCCCCATAATTTTCGATCCCAAGAAACTCAATGTCCCCATGTCGCTCAAGAATTGCACAGTCGAAATGGCGGACTGCGACAACTCGAACAGAAACGGGGGACGCCAGAACGGGAAGGGTAAAAGTGGAATAAGCGACAGAAACGGGGTTTCGATTGGCTGCCCGTTTGCCCGACTAGTGCAATACAGGTTGGTTTCCGGGCAGCGACATAACCCATTCGATATGTACTTAATTAATCAAACTCCTCGTAATGTTATTATAATTGTACATGGGATGGATCGTGAAAACAGCTTAGACTTGAGCACTTAA 1200 48.42 MHAKTDSEVTSIAPSSPTRSPRRPVYFVQSPSRDSHDGEKTATSFHSTPVLTSPMDSPPHSRSSVGRHSRESSSSRFSGSLKPGSRKITPNDVSRGAHRKGQKPWKECDVIEEEGLLEDEDRGKSLPRRCYVLAFILGFVVLFSMFALMLWGASRPMKPKITMKSITFEQFKIQAGSDFTGVATDMASVNSTVKLIFRNTGSFFGVHVSPTPVDLSYSEITVASGTVKKFYQSRKSHRSLTINVIGTRVPLYGSGASLSSSTGTPETPLPLKLRFVIRSRAYVLGQLVKPKFYRHIDCPIIFDPKKLNVPMSLKNCTVEMADCDNSNRNGGRQNGKGKSGISDRNGVSIGCPFARLVQYRLVSGQRHNPFDMYLINQTPRNVIIIVHGMDRENSLDLST* 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17691078 17705560 - Chy3G065330.1 Chy03g01553 223714

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01553 399 MobiDBLite consensus disorder prediction 1 105 - -
Chy03g01553 399 PANTHER PROTEIN, PUTATIVE-RELATED 62 317 - -
Chy03g01553 399 MobiDBLite consensus disorder prediction 70 87 - -
Chy03g01553 399 MobiDBLite consensus disorder prediction 8 25 - -
Chy03g01553 399 MobiDBLite consensus disorder prediction 42 62 - -
Chy03g01553 399 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 62 317 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01553 - - - csv:101203977 563.533
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00640 Chy-Chr1:4517433 Chy03g01553 Chy-Chr3:17691078 3.15E-67 transposed
Chy01g02076 Chy-Chr1:25533032 Chy03g01553 Chy-Chr3:17691078 3.62E-79 transposed
Chy02g01814 Chy-Chr2:20194724 Chy03g01553 Chy-Chr3:17691078 4.20E-81 transposed
Chy04g01281 Chy-Chr4:19360035 Chy03g01553 Chy-Chr3:17691078 1.14E-07 transposed
Chy02g00906 Chy-Chr2:5891620 Chy03g01553 Chy-Chr3:17691078 2.14E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g750 . . . . . . . . Cmo05g00174 Cmo12g00501 . . . Car12g00512 Sed10g1237 . Cpe07g00489 Bhi04g00362 Tan02g1803 Cmetu03g1156 . Hepe08g1293 . Lcy13g2089 Cla08g01579 Cam08g2077 Cec08g1660 Cco08g1788 Clacu08g1763 . Cre08g1548 . Cone7ag1364 Cone17ag0848 Cone20ag0196 . . . Cme03g02057 Blo17g00878 . . . . Bpe05g00028 . Bma05g00039 . . . Cma12g00557 Cma05g00177 Car05g00149 . Cpe11g00145 . . . . . . . . . . . . . . . Lsi08g01483 Csa02g01939 Chy03g01553 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007272 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 1 2 1 37