Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01558 ATGGTATTAAACATGAAGGTTCATCAGTTTGCACGTGGATTTTGGGACGAACCCTCTCTCTCCCTTGGCTGTAAACGCTTACGCCCTCTTGCTCCTAAACTTCAACAGCCCACCTCCGATAACACAACCACCACCACCACCCTCAGCACTTTCGATCTCAAGACCTTCATCAAACCCGATTGTGGTCCTCGCAAACCAGGTTCCTCCCATGATCACAGCAAAGACTCTTCCTCCTCTTCCTCTTCCCTCCAGACAGGGGTGGAAACGCATCCAGGAGGGACACGGTGGAATCCAACTCAAGAACAAATTGGGATATTGGAGATGCTTTATAGTAGAGGAATGAGGACTCCCAATGCCCAACAAATCGAACACATCACTGCACAACTTGGCAACTACGGCAAGATTGAAGGCAAGAATGTTTTTTATTGGTTTCAAAATCATAAAGCCCGTGAACGACAGAAACAGAAACGCAACAGTCTTGGTCTTCCACACTCTCCAAGAACTCCTCCCCCTCCTCCCATCATTCCCGCCTTCCACACGGGAGAGGAAGACAGCCCGTACAAGAGGAAGTGCTTGTATTGGGGTTTTGAGTGTTTGGTAGAAGATAATGGTTTAATGTGTAAAAAGGAGGAAGATCATGATAGGACTTTGGAGTTATTCCCCTTGCACCCAGAACGCTGA 681 47.72 MVLNMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQPTSDNTTTTTTLSTFDLKTFIKPDCGPRKPGSSHDHSKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPAFHTGEEDSPYKRKCLYWGFECLVEDNGLMCKKEEDHDRTLELFPLHPER* 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17744966 17745821 - Chy3G065380.1 Chy03g01558 223719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01558 226 CDD homeodomain 94 155 IPR001356 GO:0003677
Chy03g01558 226 ProSiteProfiles 'Homeobox' domain profile. 89 154 IPR001356 GO:0003677
Chy03g01558 226 MobiDBLite consensus disorder prediction 151 181 - -
Chy03g01558 226 MobiDBLite consensus disorder prediction 58 100 - -
Chy03g01558 226 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 225 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Chy03g01558 226 Pfam Homeodomain 94 153 IPR001356 GO:0003677
Chy03g01558 226 SMART HOX_1 91 158 IPR001356 GO:0003677
Chy03g01558 226 SUPERFAMILY Homeodomain-like 90 160 IPR009057 -
Chy03g01558 226 Gene3D - 93 160 - -
Chy03g01558 226 MobiDBLite consensus disorder prediction 73 100 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01558 Chy-Chr3:17744966 Chy12g01399 Chy-Chr12:18125161 3.09E-30 dispersed
Chy03g01558 Chy-Chr3:17744966 Chy02g02313 Chy-Chr2:27156129 1.04E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17755 PF00046 Homeodomain 9.60E-19 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01558 - - csv:101204222 422.935