Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01558 ATGGTATTAAACATGAAGGTTCATCAGTTTGCACGTGGATTTTGGGACGAACCCTCTCTCTCCCTTGGCTGTAAACGCTTACGCCCTCTTGCTCCTAAACTTCAACAGCCCACCTCCGATAACACAACCACCACCACCACCCTCAGCACTTTCGATCTCAAGACCTTCATCAAACCCGATTGTGGTCCTCGCAAACCAGGTTCCTCCCATGATCACAGCAAAGACTCTTCCTCCTCTTCCTCTTCCCTCCAGACAGGGGTGGAAACGCATCCAGGAGGGACACGGTGGAATCCAACTCAAGAACAAATTGGGATATTGGAGATGCTTTATAGTAGAGGAATGAGGACTCCCAATGCCCAACAAATCGAACACATCACTGCACAACTTGGCAACTACGGCAAGATTGAAGGCAAGAATGTTTTTTATTGGTTTCAAAATCATAAAGCCCGTGAACGACAGAAACAGAAACGCAACAGTCTTGGTCTTCCACACTCTCCAAGAACTCCTCCCCCTCCTCCCATCATTCCCGCCTTCCACACGGGAGAGGAAGACAGCCCGTACAAGAGGAAGTGCTTGTATTGGGGTTTTGAGTGTTTGGTAGAAGATAATGGTTTAATGTGTAAAAAGGAGGAAGATCATGATAGGACTTTGGAGTTATTCCCCTTGCACCCAGAACGCTGA 681 47.72 MVLNMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQPTSDNTTTTTTLSTFDLKTFIKPDCGPRKPGSSHDHSKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPAFHTGEEDSPYKRKCLYWGFECLVEDNGLMCKKEEDHDRTLELFPLHPER* 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17744966 17745821 - Chy3G065380.1 Chy03g01558 223719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01558 226 CDD homeodomain 94 155 IPR001356 GO:0003677
Chy03g01558 226 ProSiteProfiles 'Homeobox' domain profile. 89 154 IPR001356 GO:0003677
Chy03g01558 226 MobiDBLite consensus disorder prediction 151 181 - -
Chy03g01558 226 MobiDBLite consensus disorder prediction 58 100 - -
Chy03g01558 226 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 225 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Chy03g01558 226 Pfam Homeodomain 94 153 IPR001356 GO:0003677
Chy03g01558 226 SMART HOX_1 91 158 IPR001356 GO:0003677
Chy03g01558 226 SUPERFAMILY Homeodomain-like 90 160 IPR009057 -
Chy03g01558 226 Gene3D - 93 160 - -
Chy03g01558 226 MobiDBLite consensus disorder prediction 73 100 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01558 - - - csv:101204222 422.935
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01558 Chy-Chr3:17744966 Chy12g01399 Chy-Chr12:18125161 3.09E-30 dispersed
Chy03g01558 Chy-Chr3:17744966 Chy02g02313 Chy-Chr2:27156129 1.04E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g735 . . . . . . . . Cmo05g00169 Cmo12g00505 . . . Car12g00518 Sed11g0934 . Cpe07g00494 Bhi04g00375 Tan02g1791 Cmetu12g0458 . Hepe08g1298 . Lcy13g2095 Cla08g01585 Cam08g2084 Cec08g1665 Cco08g1796 Clacu08g1770 . Cre08g1554 . . Cone17ag0854 Cone20ag0200 . . . Cme03g02065 . . . . . Bpe05g00030 Bma01g00657 Bma05g00042 . . . Cma12g00562 Cma05g00171 Car05g00145 . Cpe11g00141 . . . . . . . . . . . . . . . Lsi08g01489 Csa02g01931 Chy03g01558 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy12g01399 CCT,ECH 1 142 Wox Gene Family AT3G18010 61.6 3.4e-41 166.0
Chy06g02276 . 1 278 Wox Gene Family AT4G35550 50.2 9.1e-71 263.8
Chy07g00400 . 1 219 Wox Gene Family AT4G35550 53.6 3.2e-60 228.8
Chy06g02276 . 36 175 Wox Gene Family AT1G20700 55.9 1.8e-39 159.5
Chy03g01558 . 5 160 Wox Gene Family AT1G46480 65.1 6.7e-52 200.7
Chy12g01399 CCT,ECH 1 142 Wox Gene Family AT3G18010 61.6 3.4e-41 166.0
Chy03g01558 . 5 160 Wox Gene Family AT1G46480 65.1 6.7e-52 200.7
Chy06g02276 . 1 278 Wox Gene Family AT4G35550 50.2 9.1e-71 263.8
Chy07g00400 . 1 219 Wox Gene Family AT4G35550 53.6 3.2e-60 228.8
Chy06g02276 . 36 175 Wox Gene Family AT1G20700 55.9 1.8e-39 159.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005110 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17755 PF00046 Homeodomain 9.60E-19 CL0123 Chy TF