Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01563 ATGGTACCACCGTTTGCCCTTGATGCTCTTTATTGCTCAGAGGAGCACTGGGAGGACGACGACGACGACGAAGAACAAGAAACGGGTTTTCGTTTTGATAAGCAATCTTACTCTAATTTAACAACAGAAACAAGTTCTCCGATTCTGGCTGTGGTGGCAGAGCATGACCTGTTTTGGGAAAAAGATGAACTAATTTCTCTGTTTTCAAGAGAGAAGCCTAATGAACTTTTTAAAACCATTCAGATTGACCCTTCTCTTGCTGCTGCCCGACGAACCGCTGTTGAGTGGATGCTGAAGGTTAATGCCCATTACTCCTTCTCTGCCCTCACTGCGGTTCTCGCCGTTGATTACTTAGATCGGTTTCTGTCCTGCTTTCATTTCCAAAGAGATAAGCCATGGATGTCTCAACTTGCAGCTGTTGCTTGTATCTCTCTTGCTGCCAAAGTGGAGGAGACTCAAGTCCCTCTTTTATTGGACCTACAAGTGGAAGATAGTAGATATCTGTTTGAAGCCAAGACCATTAAGAAAATGGAGCTTCTTGTGCTCTCTACGCTGCAGTGGCGGATGAATCCTGTTACCCCGTTTTCTTTTGTGGATTATATCACAAGAAGGCTGGGATTCAAGGACCATATGTGCTGGGAAATTCTTTGGCAGTTTGAACGAACTATTCTCTCGGTTATTTTAGATTCAGATTTCATGTCCTTTCTTCCCTCTGCAATGGCCACCGCTACAATGCTGCACGTTTTCAAAGCTATGGAAGAACCCCATTGCAGCGTTGATTACGATTACCAGCTTCTCAACATCCTAGGAATCGACAAGGGAAATGTGGAAGAATGCTGTAAACTGATCTCAAATGCATCTAGAAGGAACGGAAACCAGTTCAACAAACGTAAATTCGGGTCGTCAATTCCAGGGAGCCCGAACGGCGTGATGGACGTAACATTCAGCTCCGATAGCTCGAACGACTCGTGGTCAGTGGCTTCGTCGGTTTCATCTTCGCCAGAGCCATTAACGAAGAAGAACAGAGTAAATGGATCAGTGACTGGAGATTGTGAAACATTCCGAACGCTCTCTTAA 1077 45.03 MVPPFALDALYCSEEHWEDDDDDEEQETGFRFDKQSYSNLTTETSSPILAVVAEHDLFWEKDELISLFSREKPNELFKTIQIDPSLAAARRTAVEWMLKVNAHYSFSALTAVLAVDYLDRFLSCFHFQRDKPWMSQLAAVACISLAAKVEETQVPLLLDLQVEDSRYLFEAKTIKKMELLVLSTLQWRMNPVTPFSFVDYITRRLGFKDHMCWEILWQFERTILSVILDSDFMSFLPSAMATATMLHVFKAMEEPHCSVDYDYQLLNILGIDKGNVEECCKLISNASRRNGNQFNKRKFGSSIPGSPNGVMDVTFSSDSSNDSWSVASSVSSSPEPLTKKNRVNGSVTGDCETFRTLS* 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17786895 17788311 + Chy3G065430.1 Chy03g01563 223724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01563 358 MobiDBLite consensus disorder prediction 326 345 - -
Chy03g01563 358 PANTHER CYCLINS 32 342 IPR039361 -
Chy03g01563 358 Gene3D - 191 281 - -
Chy03g01563 358 SUPERFAMILY Cyclin-like 65 190 IPR036915 -
Chy03g01563 358 Pfam Cyclin, C-terminal domain 192 299 IPR004367 -
Chy03g01563 358 Gene3D - 75 190 - -
Chy03g01563 358 Pfam Cyclin, N-terminal domain 85 190 IPR006671 -
Chy03g01563 358 CDD CYCLIN 90 182 IPR013763 -
Chy03g01563 358 SMART Cyclin_C_2 192 319 IPR004367 -
Chy03g01563 358 ProSitePatterns Cyclins signature. 90 121 IPR006671 -
Chy03g01563 358 PANTHER CYCLIN D3.1 PROTEIN 32 342 - -
Chy03g01563 358 SMART cyclin_7 95 183 IPR013763 -
Chy03g01563 358 SUPERFAMILY Cyclin-like 174 286 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00746 Chy-Chr2:4612117 Chy03g01563 Chy-Chr3:17786895 5.55E-53 dispersed
Chy03g01563 Chy-Chr3:17786895 Chy06g01061 Chy-Chr6:8577731 2.88E-100 dispersed
Chy01g00082 Chy-Chr1:554313 Chy03g01563 Chy-Chr3:17786895 1.47E-71 wgd
Chy02g00890 Chy-Chr2:5739196 Chy03g01563 Chy-Chr3:17786895 2.69E-81 wgd
Chy03g01563 Chy-Chr3:17786895 Chy07g00160 Chy-Chr7:1346167 5.37E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01563 K14505 - csv:101205442 653.669