Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy03g01569 | ATGGCCGCCTCAGAGAACTGTGCCCGTGTAACTCGTGCTTCCAAGAAGAGAGCTGCGGCGGCCGCCGTGGTCGAGGGTCAATCGGCGAATAAAAAGCGGGTGGTTCTTGGAGAGCTTTCCAATGTTCAGAATGTTGATGGCTCGGTGGTAGGACAGAAGAGGAGGGCCAAGTCCCAGATCACAAAATGTAAGCCTAAGAAGAGAGCGAAGGTTGGTGTTGCTCCGACGATCAAGACGACAGTTGTTTCTGAAGATAATGAACCTAAGTTGACTGTCGATGATCTTTTGGATGACCCAGAGATGAAGGGGCCTTATTCCTCTGATATTTATGCATATCTTCGCAAAATGGAGGCGGAACCAAAAAGAAGGCCGATTCCAAATTACATAGAGAAGATTCAGACGGATGTAAGTGCTAATATGAGAGGGGTCTTGGTTGATTGGATGGTTGAGGTAGCAGAAGAATACAAGCTTGGCCCCGATACTCTGTATTTATCCATCTCATACCTTGATAGGTTCCTCTCAATGAACATCCTCAGTAGGCAAAGACTTCAATTGTTGGGGGTTTCTTCAATGCTTATTGCATCGAAGTATGAAGAAATCACCCCTCCTCATGTGGAGGATTTCTGCTACATAACAGATAATACTTATAGAAGAGATGAGGTTGTGAAGATGGAGGCTGATATACTCAAGTCTTTGAACTTTGAAATGGGAAATCCTACTGCCAAGACATTCTTGAGGAGGTTCACTAATATTGCTCAAGAGGATTTCAAAATACCAAATCTGCAGTTGGAATTTCTGGGTTATTACCTTGCTGAGCTGAGCTTATTGGACTATAATTTTGTTAAGTTCTTGCCTTCTATGGTTGCTGCTTCAGTTGTATTTCTTGCAAAATTTATCATCCGACCGAAGCTGCATCCTTGGGGTCCAAGCATACAACAATACACAGGCTACAAGCCAGCTGATCTAAGGCCATGTGTTATTCTGTTACATGATTTGTATATGGCCAGAAGAGGAGGGTCTTTGATAGCTGTGAGAGAAAAATACAAGCTACATAGGTTCAAGTGTGTTGCAATGATGCCTTCACCTCCTGAGATCCCCTTTTCCTATTTTGAAGAAGCTTAG | 1122 | 43.58 | MAASENCARVTRASKKRAAAAAVVEGQSANKKRVVLGELSNVQNVDGSVVGQKRRAKSQITKCKPKKRAKVGVAPTIKTTVVSEDNEPKLTVDDLLDDPEMKGPYSSDIYAYLRKMEAEPKRRPIPNYIEKIQTDVSANMRGVLVDWMVEVAEEYKLGPDTLYLSISYLDRFLSMNILSRQRLQLLGVSSMLIASKYEEITPPHVEDFCYITDNTYRRDEVVKMEADILKSLNFEMGNPTAKTFLRRFTNIAQEDFKIPNLQLEFLGYYLAELSLLDYNFVKFLPSMVAASVVFLAKFIIRPKLHPWGPSIQQYTGYKPADLRPCVILLHDLYMARRGGSLIAVREKYKLHRFKCVAMMPSPPEIPFSYFEEA* | 374 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 17814419 | 17816193 | - | Chy3G065490.1 | Chy03g01569 | 223730 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy03g01569 | 373 | CDD | CYCLIN | 239 | 330 | IPR013763 | - | |
| Chy03g01569 | 373 | Pfam | Cyclin, C-terminal domain | 239 | 362 | IPR004367 | - | |
| Chy03g01569 | 373 | SMART | cyclin_7 | 243 | 331 | IPR013763 | - | |
| Chy03g01569 | 373 | SMART | cyclin_7 | 146 | 230 | IPR013763 | - | |
| Chy03g01569 | 373 | CDD | CYCLIN | 140 | 229 | IPR013763 | - | |
| Chy03g01569 | 373 | PANTHER | CYCLIN-A3-1-RELATED | 24 | 372 | - | - | |
| Chy03g01569 | 373 | SUPERFAMILY | Cyclin-like | 97 | 236 | IPR036915 | - | |
| Chy03g01569 | 373 | ProSitePatterns | Cyclins signature. | 141 | 172 | IPR006671 | - | |
| Chy03g01569 | 373 | SUPERFAMILY | Cyclin-like | 239 | 364 | IPR036915 | - | |
| Chy03g01569 | 373 | PIRSF | Cyclin_A_B_D_E | 1 | 367 | IPR039361 | - | |
| Chy03g01569 | 373 | Gene3D | - | 124 | 237 | - | - | |
| Chy03g01569 | 373 | SMART | Cyclin_C_2 | 239 | 362 | IPR004367 | - | |
| Chy03g01569 | 373 | Pfam | Cyclin, N-terminal domain | 108 | 236 | IPR006671 | - | |
| Chy03g01569 | 373 | PANTHER | CYCLINS | 24 | 372 | IPR039361 | - | |
| Chy03g01569 | 373 | Gene3D | - | 108 | 358 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy03g00762 | Chy-Chr3:10263733 | Chy03g01569 | Chy-Chr3:17814419 | 2.93E-102 | dispersed | |
| Chy03g01569 | Chy-Chr3:17814419 | Chy04g00342 | Chy-Chr4:3059342 | 1.65E-96 | dispersed | |
| Chy01g00109 | Chy-Chr1:706935 | Chy03g01569 | Chy-Chr3:17814419 | 1.21E-99 | wgd | |
| Chy03g01569 | Chy-Chr3:17814419 | Chy07g00171 | Chy-Chr7:1422202 | 5.57E-164 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy03g01569 | K06627 | - | csv:101206145 | 708.368 |