Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01570 ATGGCAATTTCTCATCCTCCACTGATTCACTTCATCTGTATTTTCATTTTAGCTTTTGAAGGTTCACTTTTTGATTCCGTTAGATCCTCCTCCTCCTCCATCTCCAACCTTGAATCAGACAAGCAATCTTTGATTTCCCTAAAGTCTGCATTCAATAACCTTAATCTTTACGACCCTTTATCAACTTGGGATCAAAACTCATCTCCTTGCAATTGGACAGGAGTAAGCTGCAATGAAGATGGTGAAAGAGTTGTTGAGCTTGATCTTTCTGGGCTGGGTCTTGCAGGTTTTTTGCATATGCAAATTGGGAATCTTTCATTCCTGACATCACTTCAACTTCAAAACAACCAATTAACAGGCTCAATTCCAATTCAAATTGGCAATCTTTATCGCTTGAAAGTTTTGAATATGAGCTTCAATTACATAAGAGGTTATCTCCCTTTCAACATCAGTGGAATGACACAGCTTGAGATTCTTGATTTAACTTCAAACAGAATTTCAAGCCAAATTCCACAAGAATTCAGCCAATTGACAAAGCTCAAAGTTTTGAACTTGGGACAGAATCATCTCTACGGTACAATTCCCCCATCTTTTGGGAACCTTACTTCTCTAGTAACCTTAAATTTAGGAACTAATTCAGTTAGTGGTTTTATTCCTTCTGAACTGAGTCGTCTTCAAAATTTGAATGACTTAATGATTTCCATTAATAATTTCAGTGGTACTGTTCCCTATACCATTTACAACATGTCTTCATTAGTTACTTTAATATTAGCTGCAAATCGTCTTCATGGAACACTCCCCAAGGATTTTGGAGATAATCTCCCAAATCTCTTGTTCTTCAATTTCTGCTTCAACAGATTTTCAGGAACAATTCCAGAATCAATGCATAATATGACTCAAATACGAATTATTCGTTTTGCTCATAACCTTTTTGAAGGAACAATCCCCCCAGGTTTGGAAAATTTACCTCATCTTCAGATGTATTATATTGGACATAACAAGATCGTTAGTTCAGGTCCAAATGGGCTTAGTTTCATCTCCTCTTTAACCAACAGTTCTCGTCTTACTTTCATAGCTGTTGATGAAAACAAATTAGAAGGTGTGATTCCTGAATCAATTGGAAATCTTTCTAAAGTCTTTTCAAGATTGTACATGGGAGGGAATCGAATTTATGGGAATATACCATCTTCAATTGGTAACCTTCGTAGCTTAACTCTCTTGAATTTAAACAAAAACTTGCTAACTGGTGAAATCCCACCTCAAATTGGTCAGTTGGAGCAATTACAATTGTTGGGTTTAGCTAAAAATCGACTCTTGGGTAGAATTCCAAGCTCGTTGGGGAATCTTAGAAAATTAAACCACATTGATTTGTCAGAAAACAACCTTATTGGGAACATCCCTATTTCTTTTGGGAACTTCACAAACTTGCTTGCAATGGATTTGTCGAACAATAAGCTCACTGGGGGAATACCTAAAGAGGCTCTAAATTATCCAAGTTTGAGTATGGTTTTGAATCTTTCTAACAATATGCTAAGTGGGAATTTGCCACAAGAAATTGGATTACTTGAAAAAGTTGAGAAAATCGACATCTCTGAAAATCTCATTTCTGGCAATATTCCTTCTTCCATCGTTGGCTGCAAGAGTTTGGAGGTATTGACAATGGCCAAGAATGAATTTTCAGGTGAAATTCCAAGTACACTTGGAGAAATCATGGGGTTGCGAGCTTTAGATCTCTCCTCCAACAAACTTTCAGGTCCCATTCCTAATAATCTTCAAAACAGAGCATCAATACAGCTCTTGAATCTCTCATTTAACAACCTAGAAGGAGTAGTTTCTGAAGGTGGAAGAGCTTATTTAGAAGGAAACCCTAATCTTTGCTTACCTTCTTTGTGTCAAAACAACAAATCCCACAACAAAAGGAGAGTCAAAATCGTATCTTTAACAGTCGTCTTCTCAACATTAGCACTCTGTTTCGCATTGGGAACTTGGTTACATTTAGCTAAGAGAAAGTCAAAACTTTCACCATCATCATCAACTGATGAACTGATCAAAAGGCATCACGAAATGGTCTCATACGAGGAGATTCGAACCGGCACTGCCAATTTCAGTGAAGAAAATATGTTGGGAAAGGGAAGTTTTGGGACAGTTTACAAAGGGTATTTAAACCTAAACGAAATAGATGGGGGAGTTTACGCAATCAAGGTGTTGAACATTGAACGAAGTGGGTATATTAAGAGCTTTTTGAGGGAGTGTGAGGCATTGAGAAACGTGAGGCATCGGAATTTAGTGAAACTTGTTACATCTTGTTCGAGTATAGACTATGAAGGGAGGGATTTTAGAGGTTTGGTTTATGAGTTTTTGAGTAATGGAAGCTTGGAGGAGTGGATTCATGGGAAAAGAAAGCATTTGGATGGAAGTGGGTTGGATTTAATGGAGAGATTGAATATTGGGATTGATGTTGGGTGTGTGTTGGAGTATCTTCACCATGGATGTCAAGTGCCGATTGCTCATTGTGATTTGAAGCCCAGCAATATTCTATTGGCGGAAGATATGAGTGCTAAGGTTGGAGACTTTGGGTTGGCCAAGTTGTTGATGGGAAATGAAGCAGATCAGTGTTCTTCCATCACTTCCTCTCATGTTCTTAAAGGTTCCATTGGCTACATTCCCCCAGAATGCGGGATGGGAAGAACGCCGACGGTGGCCGGAGATGTATATAGTTTTGGGATAACTTTGTTGGAGCTTTTTACTGGGAAGAGTCCTACCGACGAAGGATTTAGTGAAAAACAAAATCTAGTTAAATGGGTTCAATCCACCTATTTAAGGGATTTGATTGAATTTCAAACAGTTGGATCTCCCAATAGTCAATTGAGGCAGTTAATTGGGTTCCATTGCTCCCACTACGAAGGTCGAGAAATCAGTGAACAAAACCAAATGGATTGCTTGATTCAAGTCATCGACATTGCCATCTCTTGCGTTGCGAATTCTTCTAATAAACGCATCACCATTAAAGATGCTCTTTTGAGGCTTCAACATGCTATAAATTCCCTGCTTAGATTAAGTTAG 3063 38.23 MAISHPPLIHFICIFILAFEGSLFDSVRSSSSSISNLESDKQSLISLKSAFNNLNLYDPLSTWDQNSSPCNWTGVSCNEDGERVVELDLSGLGLAGFLHMQIGNLSFLTSLQLQNNQLTGSIPIQIGNLYRLKVLNMSFNYIRGYLPFNISGMTQLEILDLTSNRISSQIPQEFSQLTKLKVLNLGQNHLYGTIPPSFGNLTSLVTLNLGTNSVSGFIPSELSRLQNLNDLMISINNFSGTVPYTIYNMSSLVTLILAANRLHGTLPKDFGDNLPNLLFFNFCFNRFSGTIPESMHNMTQIRIIRFAHNLFEGTIPPGLENLPHLQMYYIGHNKIVSSGPNGLSFISSLTNSSRLTFIAVDENKLEGVIPESIGNLSKVFSRLYMGGNRIYGNIPSSIGNLRSLTLLNLNKNLLTGEIPPQIGQLEQLQLLGLAKNRLLGRIPSSLGNLRKLNHIDLSENNLIGNIPISFGNFTNLLAMDLSNNKLTGGIPKEALNYPSLSMVLNLSNNMLSGNLPQEIGLLEKVEKIDISENLISGNIPSSIVGCKSLEVLTMAKNEFSGEIPSTLGEIMGLRALDLSSNKLSGPIPNNLQNRASIQLLNLSFNNLEGVVSEGGRAYLEGNPNLCLPSLCQNNKSHNKRRVKIVSLTVVFSTLALCFALGTWLHLAKRKSKLSPSSSTDELIKRHHEMVSYEEIRTGTANFSEENMLGKGSFGTVYKGYLNLNEIDGGVYAIKVLNIERSGYIKSFLRECEALRNVRHRNLVKLVTSCSSIDYEGRDFRGLVYEFLSNGSLEEWIHGKRKHLDGSGLDLMERLNIGIDVGCVLEYLHHGCQVPIAHCDLKPSNILLAEDMSAKVGDFGLAKLLMGNEADQCSSITSSHVLKGSIGYIPPECGMGRTPTVAGDVYSFGITLLELFTGKSPTDEGFSEKQNLVKWVQSTYLRDLIEFQTVGSPNSQLRQLIGFHCSHYEGREISEQNQMDCLIQVIDIAISCVANSSNKRITIKDALLRLQHAINSLLRLS* 1021
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17817866 17821526 - Chy3G065500.1 Chy03g01570 223731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01570 1020 Gene3D Ribonuclease Inhibitor 342 637 IPR032675 -
Chy03g01570 1020 SMART LRR_typ_2 105 129 IPR003591 -
Chy03g01570 1020 SMART LRR_typ_2 473 497 IPR003591 -
Chy03g01570 1020 SMART LRR_typ_2 401 425 IPR003591 -
Chy03g01570 1020 SMART LRR_typ_2 177 200 IPR003591 -
Chy03g01570 1020 SMART LRR_typ_2 153 176 IPR003591 -
Chy03g01570 1020 SMART LRR_typ_2 201 225 IPR003591 -
Chy03g01570 1020 SMART LRR_typ_2 249 273 IPR003591 -
Chy03g01570 1020 SMART LRR_typ_2 449 472 IPR003591 -
Chy03g01570 1020 ProSitePatterns Protein kinases ATP-binding region signature. 708 734 IPR017441 GO:0005524
Chy03g01570 1020 SUPERFAMILY L domain-like 61 350 - -
Chy03g01570 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 835 847 IPR008271 GO:0004672|GO:0006468
Chy03g01570 1020 Gene3D Phosphorylase Kinase; domain 1 664 786 - -
Chy03g01570 1020 SUPERFAMILY L domain-like 382 629 - -
Chy03g01570 1020 SUPERFAMILY Protein kinase-like (PK-like) 681 1009 IPR011009 -
Chy03g01570 1020 Pfam Leucine rich repeat 155 212 IPR001611 GO:0005515
Chy03g01570 1020 Gene3D Ribonuclease Inhibitor 248 341 IPR032675 -
Chy03g01570 1020 Gene3D Transferase(Phosphotransferase) domain 1 787 1017 - -
Chy03g01570 1020 Gene3D Ribonuclease Inhibitor 35 187 IPR032675 -
Chy03g01570 1020 Pfam Protein kinase domain 703 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy03g01570 1020 Pfam Leucine rich repeat N-terminal domain 38 78 IPR013210 -
Chy03g01570 1020 ProSiteProfiles Protein kinase domain profile. 702 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy03g01570 1020 PANTHER OS04G0122200 PROTEIN 26 1011 - -
Chy03g01570 1020 Gene3D Ribonuclease Inhibitor 188 247 IPR032675 -
Chy03g01570 1020 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 26 1011 - -
Chy03g01570 1020 SMART serkin_6 702 1013 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy03g01570 1020 Pfam Leucine Rich Repeat 573 593 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01570 - - - csv:101219969 1875.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01570 Chy-Chr3:17817866 Chy03g01574 Chy-Chr3:17831282 0 dispersed
Chy03g01570 Chy-Chr3:17817866 Chy03g01571 Chy-Chr3:17822365 3.61E-06 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g690 . . . . . . . . . . . . . . . . Cpe07g00506 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00578 . Car05g00136 . . . . . . . . . . . . . . . . . Lsi08g01506 Csa02g01915 Chy03g01570 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000052 15 13 4 11 4 8 7 7 11 17 9 10 8 7 14 8 11 4 7 11 14 16 4 8 4 14 8 18 7 5 284
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71151 PF00069 Pkinase 4.00E-37 CL0016 Chy PK