Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01587 ATGGAGGCTTTGGGAGTTTTTTCCGATGGGGAATGGGAATCTTTCGCAGCCATGTTCTCATCGGAAGAGATAAATCAGACCCATATACCGATGACTAATTGTTGTTCGAGTGAGCTTCATCAATTGCCCAACAATGGCAGCGGCGGCGGCGGCAGCAGCAGCAGTTGGTTCTATTCATTGGATGCTTTTGTTCCTAATTTGCAGAGTTATTGTAAACAGGACATTAGGAGCTGTTCTAGTGCTTCAGTTTTGATTCCGAATTCGAGTGATTTTTTTATGCCAATTGATGAGAGGAATTTTGGGTCCGAGTTTTTTTCTGATGTTCTAATCGAGGAAGTCAATAATGCTCTCGCCGTCGATGCCGAAGGGAAGGATTCCGGCATGGCGAGATTCATAGAGAATAATGTACTACAAAGTAACCACCCGCCACCGTCGCCGCTTCTAGATTCAGCCGGTGCCGGAAACAAATTACCAATTGCATTGAAAAGGAAAGTCAATAATGGAGACATTTCCGATAATCAGAAGAAGAAAACTCGAATCACCTCAAATGTGCAGAGGAAGAAGAAAACAGAGAATCAGAAGCGGAGAGGGGAAACTGTAGAGGAGGAAGGACAGAGCTCCATTAGTTATAATTCAGACCAGGAAGAGAATAGTTCCGAGGAAGCCAATGGCGGCGGCTCAGGCGCCAGCTCCGACGGTGGCGTCAACAGAAAAAGCAGAGCAAGCAGAGGGTCGGCCACCGATCCCCAAAGCCTCTACGCCAGAAAACGAAGGGAAAGAATCAATGAGAGGTTGAGAATATTACAAAAACTTGTTCCAAATGGAACCAAGGTTGATATCAGTACCATGCTCGAAGAAGCAGTTCATTATGTCAAGTTTTTGCAGCTCCAAATCAAGTTGTTGAGCTCAGATGAGATGTGGATGTTTGCTCCTTTGGCTTACAATGGAATGGACATTGGCCTTCAACATAACCTCTCTCCCTTTCTATCTCATTGA 996 45.18 MEALGVFSDGEWESFAAMFSSEEINQTHIPMTNCCSSELHQLPNNGSGGGGSSSSWFYSLDAFVPNLQSYCKQDIRSCSSASVLIPNSSDFFMPIDERNFGSEFFSDVLIEEVNNALAVDAEGKDSGMARFIENNVLQSNHPPPSPLLDSAGAGNKLPIALKRKVNNGDISDNQKKKTRITSNVQRKKKTENQKRRGETVEEEGQSSISYNSDQEENSSEEANGGGSGASSDGGVNRKSRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDEMWMFAPLAYNGMDIGLQHNLSPFLSH* 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17898667 17900257 + Chy3G065670.1 Chy03g01587 223748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01587 331 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 3 328 - -
Chy03g01587 331 MobiDBLite consensus disorder prediction 184 202 - -
Chy03g01587 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 245 307 IPR036638 GO:0046983
Chy03g01587 331 MobiDBLite consensus disorder prediction 162 257 - -
Chy03g01587 331 SMART finulus 251 300 IPR011598 GO:0046983
Chy03g01587 331 Pfam Helix-loop-helix DNA-binding domain 255 295 IPR011598 GO:0046983
Chy03g01587 331 Gene3D - 247 310 IPR036638 GO:0046983
Chy03g01587 331 PANTHER TRANSCRIPTION FACTOR BHLH84-LIKE 3 328 - -
Chy03g01587 331 MobiDBLite consensus disorder prediction 203 249 - -
Chy03g01587 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 245 294 IPR011598 GO:0046983
Chy03g01587 331 CDD bHLH_AtIND_like 246 308 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01587 Chy-Chr3:17898667 Chy02g02104 Chy-Chr2:25359984 3.47E-21 dispersed
Chy01g00403 Chy-Chr1:2861994 Chy03g01587 Chy-Chr3:17898667 5.18E-13 transposed
Chy09g00499 Chy-Chr9:4851121 Chy03g01587 Chy-Chr3:17898667 8.94E-26 transposed
Chy01g00128 Chy-Chr1:848554 Chy03g01587 Chy-Chr3:17898667 4.23E-55 wgd
Chy03g01587 Chy-Chr3:17898667 Chy07g00184 Chy-Chr7:1509735 3.62E-55 wgd
Chy03g01587 Chy-Chr3:17898667 Chy07g01715 Chy-Chr7:20896769 1.58E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17759 PF00010 HLH 9.90E-09 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01587 - - csv:101221853 586.645