Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01592 ATGTGGAAGAATATTAGAGATAGAGAAGCGGGAAAACTCCGCCCAAATTCTTTCGCAAATCGTGTTAAATCCGATCGAACCAGCTCTCTGCAACTTTCCAATCATAAGGATATTGTCTCTCCCCATAGAGGTTCCGTCAACTCACTTCAGGTTGATTTGACAGAGGGGAGATATTTGTTATCTGGAGCATCAGATGCATCAGCTGCTGTTTTTGATATTCAACGTGCAACTCATTCCGAGGGTCTCATTGCAAAGCACCAATGCATTTTTGCAGTTGATAAGCAGCATGAACATGGACATAAATATGCAATATCCTCAGCCATATGGTATCCTGTCGATACTGGATTGTTTGTCACCGGCTCATTTGATCATCACATTAATGTCTGGGATACAAATACAACTCAGGTGGTGGTGAATTTTAAATTGCCTGGAAAAGTTTATAGGACAGCCATGTCCTCTTTGGCAACATCGCACATGCTGATTGCTGCTGGAACAGAAGATGTCCAAGTTCGCCTTTGTGATATTTCTTCCGGAGCATTCTCTCACACATTATCTGGACATCGTGATGGTGTAATGAGTGTGGAATGGTCAGCATCTAGCGAGTGGGTTTTGATTACTGGAGGATGTGATGGAGCTATACGCTTTTGGGACATCAGACGAGCTGGATGCTTTCGTGTTCTAGATCAGTCTCAATCCCAGCTTGGGAGACGCCCCCCCATTTCAGGATGGACTGCAAATAAGCTCTCAACATCTAAGTCTCTCTTGGCCAGTCAGGGTTCAAATATGAAATCTCGTATACCTCATAAGAAACTAACCAATGGAAATGCAACAAAGCCATCATCGACAGGTAAACTGCCAGCTAAGGGATCCACAAGGCAGAGGTTACACCCAGGGCTTTTGTCTGGTCAGGATCGAGCAGTTTCTCACTATGGTGCTGTCACTGGATTAAAAGTAACCGGAGATGGCATGTACCTACTCAGTGCAGGTTCTGATTCAAGGTTAAAGTTGTGGGATGTTGAATCCGGGTGCAATACACTTGTGAATTTTGAAACCATGCGGTTACAGACCAATAAACCATTGCAACTAGCCACATCTCAGGATTCATCCCTTGTATTTGCCCCATGCATGGCGACTGTTAAAGCATTTGATATGTGGACAGGGAAGACATCCCTGACATTCGGCGGCCACTATGAAGGTGTGAACTGTTGCTGGTATAATTTCCCAGATCAGGCAGATTCTTGTCTGGTCACCATCCCAAAACTCTACCGAACTGGTACACCTTCTAAACTCATGCCTATTCCTGGAATTAATTTGACTCTGCTGGCATATTTTTCCATTAATACCATTGAAGTTACCCTGGTAGCTTATTCCATTTCAGTGGACTCGCAGGATTGGGAATCAACTGCAGACAAGGATAACTGGAGCGACTGA 1431 44.3 MWKNIRDREAGKLRPNSFANRVKSDRTSSLQLSNHKDIVSPHRGSVNSLQVDLTEGRYLLSGASDASAAVFDIQRATHSEGLIAKHQCIFAVDKQHEHGHKYAISSAIWYPVDTGLFVTGSFDHHINVWDTNTTQVVVNFKLPGKVYRTAMSSLATSHMLIAAGTEDVQVRLCDISSGAFSHTLSGHRDGVMSVEWSASSEWVLITGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPISGWTANKLSTSKSLLASQGSNMKSRIPHKKLTNGNATKPSSTGKLPAKGSTRQRLHPGLLSGQDRAVSHYGAVTGLKVTGDGMYLLSAGSDSRLKLWDVESGCNTLVNFETMRLQTNKPLQLATSQDSSLVFAPCMATVKAFDMWTGKTSLTFGGHYEGVNCCWYNFPDQADSCLVTIPKLYRTGTPSKLMPIPGINLTLLAYFSINTIEVTLVAYSISVDSQDWESTADKDNWSD* 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17931761 17936273 - Chy3G065720.1 Chy03g01592 223753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01592 476 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 306 342 - -
Chy03g01592 476 ProSiteProfiles Trp-Asp (WD) repeats profile. 97 139 IPR001680 GO:0005515
Chy03g01592 476 MobiDBLite consensus disorder prediction 257 288 - -
Chy03g01592 476 Gene3D - 1 414 IPR015943 GO:0005515
Chy03g01592 476 PRINTS G protein beta WD-40 repeat signature 117 131 IPR020472 -
Chy03g01592 476 PRINTS G protein beta WD-40 repeat signature 204 218 IPR020472 -
Chy03g01592 476 PRINTS G protein beta WD-40 repeat signature 325 339 IPR020472 -
Chy03g01592 476 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 1 427 IPR042238 GO:0006283
Chy03g01592 476 ProSitePatterns Trp-Asp (WD) repeats signature. 204 218 IPR019775 -
Chy03g01592 476 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 226 IPR001680 GO:0005515
Chy03g01592 476 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 184 219 - -
Chy03g01592 476 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 347 IPR001680 GO:0005515
Chy03g01592 476 SMART WD40_4 177 217 IPR001680 GO:0005515
Chy03g01592 476 SMART WD40_4 85 130 IPR001680 GO:0005515
Chy03g01592 476 SMART WD40_4 32 72 IPR001680 GO:0005515
Chy03g01592 476 SMART WD40_4 300 338 IPR001680 GO:0005515
Chy03g01592 476 Pfam WD domain, G-beta repeat 181 217 IPR001680 GO:0005515
Chy03g01592 476 Pfam WD domain, G-beta repeat 308 338 IPR001680 GO:0005515
Chy03g01592 476 Pfam WD domain, G-beta repeat 98 130 IPR001680 GO:0005515
Chy03g01592 476 ProSitePatterns Trp-Asp (WD) repeats signature. 325 339 IPR019775 -
Chy03g01592 476 SUPERFAMILY WD40 repeat-like 39 407 IPR036322 GO:0005515
Chy03g01592 476 MobiDBLite consensus disorder prediction 257 293 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01592 K10570 ERCC8, CKN1, CSA; DNA excision repair protein ERCC-8 - csv:101209203 850.892
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01592 Chy-Chr3:17931761 Chy10g00679 Chy-Chr10:13219221 9.17E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g648 . . . . . . . . . Cmo12g00539 . . . Car12g00543 . . Cpe07g00517 Bhi04g00418 Tan02g1734 Cmetu03g0611 . Hepe08g1335 . Lcy13g2133 Cla08g01622 Cam08g2124 Cec08g1709 Cco08g1833 Clacu08g1810 . Cre08g1591 . . Cone17ag0887 Cone20ag0234 . . . Cme03g02103 . . . . . . . . . . . Cma12g00599 . . . . . . . . . . . . . . . . . . . Lsi08g01528 Csa02g01894 Chy03g01592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007829 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 6 1 36