Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01596 ATGCTGTGCGCTTGTTCAGGAGAGCAATTCAAGTTTGAAGAGCCACCGCAGTCCCCAGAGTCACTTGCGACGAGAGATTTCTCGGCCAGTTGCCTTTCCTCGAGAACTGGAGACTGGGATTTAAAATTTGAAGATTCTCAAGTAGATGAAGTTGAATCCACTTTAAGAGAAGCACTCTCATTAAACTACGAGGAAGCCCGAGCTTTACTGGGGAGGCTTGAATATCAAAGAGGAAATTTTGATGCTGCTCTACAGGTTTTTCAAGGTATAGACATTAAATCCTTGACGCCAAGAATGGTCAAGGCAATTACTGAAAAGACAAGGGAGGAAAAACCTCGTCCTAAAGGTGACAGTACCGCCCCCCCTAGTGGTGTAATGTCCATGCATTCTGTTAGCCTACTACTTGAAGCAATTTTACTCAAGGCAAAATCGCTGGAGGAACTTGGCAGATATATGGAGTCTGCAAAAGAGTGCAGGATAATTCTTGACACGGTGGAATCAGCTCTGTCTAATGGAATGCCCGAGTGCATTGGTGAAGACTGCAAATTGCAGGAAATGTTTCACAGAGCTTTGGAATTACTGCCTACTCTGTGGATTAAGGGAGGGTGTCTTGATGAGGCCATAAATGCCTATCGCCGAGTCCTTGTTAAACCATGGAATCTAGATCCAAACAAGTTGGCTGCCATACAGAAAGAATTGGCTGGGACATTACTCTATGGAGGTGTTGAAGCAAGCCTTCCCCTTAAATTTCATGTATTTGGCCCAAGAACACCTAAAAACAATGTAGAAGAAGCAATCCTTCTGCTACTGATACTCATGAGGAAAGTGGCGATGCAGGAAATAAACTGGGACCCAGAGATTATGAATCATCTGACTTATGCACTTTCTATCACAAGACAATTTGAATTACTCGCCGAGCATGTGGAGCGGATCCTTCCTGGAATATATAGTCGAGCTGAAAGGTGGTACTTTCTTGCCCTATGTTACAATGCAGCAGGACAAAATGAAGCAGCTCTGAACCTTCTAACAAAAGTTTGCGGTTCCTCTGAAGTAAATCAAAAGCCCCATTTTCATTCTTTTCTGTTACTTACAAAATTGTGTTCAGAGGATACAAAATATGCACGCGATGGAATTAAATTTGCTCGTATAATGATGAATATGGCCAGTGAGCAAAGTAAACATTTTAACCCCGAAGCCCACAAATTTTTAGGTATTTGCTATGGGAATGCAGCTAGAGCGTCTGTGTCAGACTCTGAAAGAACTCTTTTCCAAAAAGAATCATTGAACTCTCTACGAATTTCTTCTCTCAGTAGAAGGCATGATCCAGAAGTAATGTTTAACATTAGTTTGGAAAATGCTGTGCAGAGAAATCTTGATGTTGCCTTCTACAGTGCAATGGCGTACTCAAATATGGTGGCTGATGGCTCTGGGAGAGGTTGGAAGTTGTTGACCCTCATACTTTCAGCTGAGAAACGACTCACGGATGCCGAAACCATAGTTGATTTTGCTTTGGATGAAGCTGATAGGATGGACCAATTGGATTTTCTTCGATTGAAAGCTGTCCTCAAAATTGCTCAGGAACAGCCAAAGCAAGCAATAGAAACCTACAGAATCTTGCTAGCACTAATTCAAGCACGAGATGAACATCAGCTTCAGACTAAGAACTTTGACCAATCCAAGGACTTGGAACTGGAGGCCATGGCAGAACGTAACTTGGAACGGGCAGCCTGGCAGGATTTGGCTGCCATATATTCAAAACTTGCTTCATGGGCGGATGCAGAAATCTGTCTGAACAAAGCCAAGTCATTAGATTTTCATTGCCCCAGAGGTTGGCATACAACAGGCAGGTATTTTGAAGCTCAATCGTTACACAAGGAAGCCCTTGTTTCATTCTCTGTCGCTCTATCGATTGATCCTGATTATATTCCAAGTATCATCTCAACAGCAGAAGTGTTGATGAAATGTGGTAACCAATCACTTCCAATTGCGCGCAGCTTGTTGATGAATGCTGTAAGATTGGATCCTACAAGCCATGAAGCATGGCTCAACCTTGGAATGCTTTCCAAAATGGAAGGTCTTTTGCTACAAGCTGCAGATTTTTTTCAAGCTGCACATGAACTCCAACTATCGGCTCCACCTCAGAGTTTCGTATAG 2154 42.9 MLCACSGEQFKFEEPPQSPESLATRDFSASCLSSRTGDWDLKFEDSQVDEVESTLREALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIKSLTPRMVKAITEKTREEKPRPKGDSTAPPSGVMSMHSVSLLLEAILLKAKSLEELGRYMESAKECRIILDTVESALSNGMPECIGEDCKLQEMFHRALELLPTLWIKGGCLDEAINAYRRVLVKPWNLDPNKLAAIQKELAGTLLYGGVEASLPLKFHVFGPRTPKNNVEEAILLLLILMRKVAMQEINWDPEIMNHLTYALSITRQFELLAEHVERILPGIYSRAERWYFLALCYNAAGQNEAALNLLTKVCGSSEVNQKPHFHSFLLLTKLCSEDTKYARDGIKFARIMMNMASEQSKHFNPEAHKFLGICYGNAARASVSDSERTLFQKESLNSLRISSLSRRHDPEVMFNISLENAVQRNLDVAFYSAMAYSNMVADGSGRGWKLLTLILSAEKRLTDAETIVDFALDEADRMDQLDFLRLKAVLKIAQEQPKQAIETYRILLALIQARDEHQLQTKNFDQSKDLELEAMAERNLERAAWQDLAAIYSKLASWADAEICLNKAKSLDFHCPRGWHTTGRYFEAQSLHKEALVSFSVALSIDPDYIPSIISTAEVLMKCGNQSLPIARSLLMNAVRLDPTSHEAWLNLGMLSKMEGLLLQAADFFQAAHELQLSAPPQSFV* 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17943869 17946585 + Chy3G065760.1 Chy03g01596 223757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01596 717 MobiDBLite consensus disorder prediction 105 124 - -
Chy03g01596 717 PANTHER PROTEIN NPGR1 1 717 - -
Chy03g01596 717 SUPERFAMILY TPR-like 46 343 IPR011990 GO:0005515
Chy03g01596 717 Gene3D Tetratricopeptide repeat domain 546 714 IPR011990 GO:0005515
Chy03g01596 717 SMART tpr_5 574 607 IPR019734 GO:0005515
Chy03g01596 717 SMART tpr_5 608 641 IPR019734 GO:0005515
Chy03g01596 717 SMART tpr_5 678 711 IPR019734 GO:0005515
Chy03g01596 717 SMART tpr_5 513 546 IPR019734 GO:0005515
Chy03g01596 717 SMART tpr_5 319 352 IPR019734 GO:0005515
Chy03g01596 717 Gene3D Tetratricopeptide repeat domain 39 241 IPR011990 GO:0005515
Chy03g01596 717 Gene3D Tetratricopeptide repeat domain 256 545 IPR011990 GO:0005515
Chy03g01596 717 PANTHER PROTEIN NPG1 1 717 IPR043376 -
Chy03g01596 717 SUPERFAMILY TPR-like 515 688 IPR011990 GO:0005515
Chy03g01596 717 ProSiteProfiles TPR repeat profile. 608 641 IPR019734 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01596 Chy-Chr3:17943869 Chy04g01101 Chy-Chr4:17045098 0 dispersed
Chy03g01596 Chy-Chr3:17943869 Chy06g00453 Chy-Chr6:3021428 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01596 K21843 - csv:101209448 1373.22