Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01604 ATGGATAAAACGTCGCCAACACCTGAGGAGAACTTGAAGGAGGAATTCTGGGAGAAGGAATGTGAGGTTGGGGTGCAGAACGGGAAGAAAAATGTTAGGGCAAGAAAAATCGATGAAAAGAAGGATAAAACGTCACCAATACCTACTCCTGAGGACAACTTGAGGGAAGAATTCCGGGAGAAGGAATGTGAGGTTGGGGTGCAGAACGGGAAGAAAAGTGTTAGTGCAAGAAAAATCGATGAAAGGAAGGATAAAACGTCACCAACACCTGAGGAGAACTTGAAAGAGGAATTCCTGGAGAAGGAATGTAAGGCTGGGGTGCAGAACGGGAAGAAAAATGTTAGGGCAAGAAAAATCGACGAAAAGAAGGGGACTGGGAGTCAACGTGGACCTGAGAAAACTGGCTACGCTCATGAGATGAAGGAGATGGAAAACAAATTAAGTCTTATTTCAGTGAGTTTCGAAATTAAAAGAGGGAGGAATAATGGTGTTGACAGAGGTAGTAGTCAAGGCAATCGGAATTTCAGAGATCGTCGGAATCTTCATCGTCGGGGTCCTCGTAAACAGAGGGATGTTAAAATGATTTGGGTGAGGAAAGATGAGCTTTCAAAAGTTTATTGGAATCACAAATTGATGAGTAATTTTACAGGTTCGCGTTGTGATAATAGTGGGTGTGAATCGGGGTGGACAATGTATTTCGAGGAGTCGATTGAGACGGAGGAAAGGTTTAGGGGGAGTCCGGTGGATTATGGCGGCGGAGAGAAGGAGGAGGAAGAAAGGGATTTGTCGATGATTTCGGATGCATCGTCGGGGCCGAGGAACGTGTATTATGAGGAGAAGAATTGTCAGTCAGTGTCGCGGAGTGGAGAGAAATTGGTGGCCGGGAAAAGTAAGAGGCAAGAGGAAATGGGGTGGCGGAACCAACATTCTTGCCTTGATGACACTGCAAGCTCCCCTGTTTTTGGGCTTTCTAAGATCAGAGAGACGAATCCATACAGAAATAAAGGTTTGGCGGATAATGTAAAAGAATTCTCCCAAACCCATTCTCGAAAACATGGCAAGAATTTGGAAGCTGTTGGTGGATGCAACTCCACTCTCGCTTTCACTCAATCCACCCTTTCAGAAATGGAGGACGCCTACGCCAGATCCATTACTGAGGTTTTGGATTTCTTTGGGGTTGACCCATCACAAGGTCTCACAGATGATCAGGTTTTACATCATGCTAAACTCTATGGAAAAAACTTGGTACCTGAGGAGAAAAGGGCCCCATTTTGGAAATTGGTTTTGAAGCAGTTTGATGATTTACTAGTGAAGATATTAATTGTTGCAGCAGTTGTTTCTTTCCTTTTGGCTTTGATAAATGGAGAGACAGGTGTAACAGCGTTTTTGGAGCCTTCGGTAATTCTAATGATATTGGCTGCAAATGCAGCAGTAGGAGTGATTACGGAAACAAATGCTGAAAAGGCTCTTGTGGAACTACGAGCATACCAGGCAGAGATTGCTACTGTGTTGAGAAATGGTTGCTTTTCAATACTTCCGGCTACTGAGCTTGTTCCTGGTGATATTGTAGAAGTTGCTGTGGGGTACAAAATTCCAGCTGATATGAGAATGATTGAGATGCTGACTAGTCAGTTACGTGTGGATCAAGCAATTCTCACTGGTGAAAGTTGCTCAGTTGAAAAAGAGCTTGAGTCCACTAGAGCAGCAAATGCTGTATATCAAGACAAGACAAATATTCTTTTTTCTGGTACAGTGGTGGTTGCTGGCAGGGCGCGTGCTATTGTGGTAGGAGTTGGTGCAAATACTGCCATGGGCAATATACGGGATTCTATATTGCAAACAGATGACGATGTTACACCATTGAAAAAGAAGCTCGATGAATTTGGTACCTTTCTGGCTAAGGTTATTGCTGGAATTTGTGCACTTGTATGGATAGTGAACATTGGTCACTTTCGTGATCCTTCACATGGTGGGGTTTTGAGTGGTGCTATACACTACTTCAAGATTGCAGTTGCTCTTGCTGTTGCGGCAATTCCTGAAGGTCTTCCTGCTGTTGTCACAACGTGTTTGGCTCTTGGCACCAAACGAATGGCACGTCTAAATGCAATTGTGAGGTCTTTGCCTTCTGTTGAAACTTTAGGCTGCACTACTGTTATATGTAGTGACAAGACTGGAACTTTGACTACCAATATGATGTCTGTCTCAAAGATTTGTGTGGTCCATTCTGTTGTGCATGGTCCGCAACTTTCTGAGTACAATGTCAGTGGTACAACATATGCTCCTGATGGTATTATTTTTGACAACACGGGAGTCCAGCTTGAGATTCCAGCTCAATTGCCTTGTATTCTACATATGGCGATGGGGTCTGCCCTCTGCAACGAGTCTACTTTGCAATATAATCCAGACAAGGGAAGCTATGAAAAAATTGGTGAATCAACTGAAGTAGCACTGCGTGTCTTTGCTGAAAAGGTTGGGCTTCCTGGTTTTACTTCTATGCCTTCTGCTCTAAACATGCTCAGCAAGCATGAGCGTGCATCCTATTGTAACCACCATTGGGAGAGCCAATTCAAAAAGATTTCTGTATTGGATTTTTCTCGCGATCGGAAGATGATGAGCATTTTGTGTAGCAGAAACCAGTCACATATCCTATTCTCGAAGGGTGCTCCTGAGAGCATTATTTCAAGATGCTCAAGTATCCTTTGTAACGTAGATGGTTCCACCACCGTTTTAACTTCCAGCGTTCGCACTGAACTTGAAGCAAGATTTCAAAGTTTTGCAGGAAATGAAATGCTTAGGTGCCTGGCTATAGCATTCAAATTGCTTCCGTTGAATCAGCAGAGTTTATCCTTTGACGATGAGAAAGATCTAACATTCATTGGGTTGGTTGGAATGCTTGATCCACCTAGAGAGGAAGTGAGAAATGCTATGCTTTCATGCATGACTGCCGGCATACGTGTTATAGTTGTAACTGGAGACAATAAGTCAACTGCTGAATCGCTCTGTCGCAAGATTGGTGCATTTGATCACTTGGTAGATCTAACTGGCCATTCTTATACTGCTTCTGAATTTGAAGAGCTACCTGCAATGCAAAAAACAATGGCATTGCAACGAATGGCACTCTTCACCAGGGTTGAACCTTCTCATAAGAGAATGCTTGTGGAGGCCTTGCAACATCAAAATGAAGTGGTTGCTATGACAGGTGATGGCGTCAATGATGCACCTGCACTGAAGAAAGCAGATATTGGAATTGCCATGGGTTCAGGAACAGCGGTTGCCAAGAGTGCTTCTGATATGGTCTTAGCTGATGACAATTTTGCTACTATTGTTGCGGCTGTTGCAGAGGGCAGAGCTATTTACAATAATACCAAGCAGTTCATCAGATACATGATCTCTTCAAATATTGGTGAAGTAGTTTGTATCTTTGTAGCAGCTGTTCTTGGAATACCAGAGACACTTGCCCCCGTGCAACTTCTTTGGGTTAACTTGGTCACTGATGGGTTGCCTGCAACTGCAATTGGATTTAACAAGCAAGACTCTGATGTAATGAAAGCTAAGCCTCGGAAGGTGAATGAAGCTGTGGTGACTGGATGGTTGTTCTTCCGTTATTTGGTAATCGGAGCTTATGTTGGTCTTGCAACAATTGCTGGCTTCATATGGTGGTTTATATACTCTGACAATGGTCCTAAGTTAACTTACACTGAGTTGATGAATTTTGATACTTGTTCAACCAGAGAGACGACATACCCTTGCAGTATATTTGAGGATCGACATCCTTCGACTGTGTCCATGACTGTGCTTGTTGTTGTCGAGATGTTCAATGCTTTAAATAATCTAAGTGAAAATCAATCTCTTCTTGTTATCCCTCCGTGGAGTAATTTATGGCTCGTTGCCTCCATTGTCTTAACCATGATCCTACACATGCTTATTATGTATGTGCAACCTCTCGCTGTTCTTTTCTCTGTAACACCACTATCTTGGGCTGAATGGTCGATGGTTTTGTATCTTTCATTTCCTGTTATTATCATTGATGAGGTATTGAAGTGCTTTTCACGACGCTCCAGTAGCACTGGCAGGTTGAGGCTTCCATTCAGATTCAGAAGGCACGAATTACTTCCAAAGAAGGAATTACATGACAAGTAG 4140 43.16 MDKTSPTPEENLKEEFWEKECEVGVQNGKKNVRARKIDEKKDKTSPIPTPEDNLREEFREKECEVGVQNGKKSVSARKIDERKDKTSPTPEENLKEEFLEKECKAGVQNGKKNVRARKIDEKKGTGSQRGPEKTGYAHEMKEMENKLSLISVSFEIKRGRNNGVDRGSSQGNRNFRDRRNLHRRGPRKQRDVKMIWVRKDELSKVYWNHKLMSNFTGSRCDNSGCESGWTMYFEESIETEERFRGSPVDYGGGEKEEEERDLSMISDASSGPRNVYYEEKNCQSVSRSGEKLVAGKSKRQEEMGWRNQHSCLDDTASSPVFGLSKIRETNPYRNKGLADNVKEFSQTHSRKHGKNLEAVGGCNSTLAFTQSTLSEMEDAYARSITEVLDFFGVDPSQGLTDDQVLHHAKLYGKNLVPEEKRAPFWKLVLKQFDDLLVKILIVAAVVSFLLALINGETGVTAFLEPSVILMILAANAAVGVITETNAEKALVELRAYQAEIATVLRNGCFSILPATELVPGDIVEVAVGYKIPADMRMIEMLTSQLRVDQAILTGESCSVEKELESTRAANAVYQDKTNILFSGTVVVAGRARAIVVGVGANTAMGNIRDSILQTDDDVTPLKKKLDEFGTFLAKVIAGICALVWIVNIGHFRDPSHGGVLSGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVSKICVVHSVVHGPQLSEYNVSGTTYAPDGIIFDNTGVQLEIPAQLPCILHMAMGSALCNESTLQYNPDKGSYEKIGESTEVALRVFAEKVGLPGFTSMPSALNMLSKHERASYCNHHWESQFKKISVLDFSRDRKMMSILCSRNQSHILFSKGAPESIISRCSSILCNVDGSTTVLTSSVRTELEARFQSFAGNEMLRCLAIAFKLLPLNQQSLSFDDEKDLTFIGLVGMLDPPREEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDHLVDLTGHSYTASEFEELPAMQKTMALQRMALFTRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPETLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKAKPRKVNEAVVTGWLFFRYLVIGAYVGLATIAGFIWWFIYSDNGPKLTYTELMNFDTCSTRETTYPCSIFEDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVIPPWSNLWLVASIVLTMILHMLIMYVQPLAVLFSVTPLSWAEWSMVLYLSFPVIIIDEVLKCFSRRSSSTGRLRLPFRFRRHELLPKKELHDK* 1380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17967781 18005874 + Chy3G065840.1 Chy03g01604 223765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01604 1379 MobiDBLite consensus disorder prediction 160 188 - -
Chy03g01604 1379 SFLD p-type atpase 701 1118 IPR044492 -
Chy03g01604 1379 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 727 964 IPR023299 GO:0000166
Chy03g01604 1379 TIGRFAM ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type 428 1220 IPR005782 GO:0005388|GO:0006816|GO:0016021
Chy03g01604 1379 MobiDBLite consensus disorder prediction 243 270 - -
Chy03g01604 1379 Gene3D - 730 967 IPR023299 GO:0000166
Chy03g01604 1379 Pfam E1-E2 ATPase 497 699 - -
Chy03g01604 1379 Gene3D - 430 1351 - -
Chy03g01604 1379 PANTHER CALCIUM-TRANSPORTING ATPASE 378 1358 - -
Chy03g01604 1379 Pfam Cation transporting ATPase, C-terminus 1150 1349 IPR006068 -
Chy03g01604 1379 SMART Cation_ATPase_N_a_2 378 452 IPR004014 -
Chy03g01604 1379 MobiDBLite consensus disorder prediction 34 67 - -
Chy03g01604 1379 ProSitePatterns E1-E2 ATPases phosphorylation site. 722 728 IPR018303 -
Chy03g01604 1379 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 1036 1154 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy03g01604 1379 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 467 741 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy03g01604 1379 PRINTS H+-transporting ATPase (proton pump) signature 1097 1122 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy03g01604 1379 PRINTS H+-transporting ATPase (proton pump) signature 1066 1082 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy03g01604 1379 PRINTS H+-transporting ATPase (proton pump) signature 1038 1054 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy03g01604 1379 PANTHER SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 3 378 1358 - -
Chy03g01604 1379 Gene3D - 397 612 - -
Chy03g01604 1379 Pfam Cation transporter/ATPase, N-terminus 381 447 IPR004014 -
Chy03g01604 1379 Gene3D - 717 1110 IPR023214 -
Chy03g01604 1379 PRINTS P-type cation-transporting ATPase superfamily signature 1066 1085 - -
Chy03g01604 1379 PRINTS P-type cation-transporting ATPase superfamily signature 548 562 - -
Chy03g01604 1379 PRINTS P-type cation-transporting ATPase superfamily signature 960 971 - -
Chy03g01604 1379 PRINTS P-type cation-transporting ATPase superfamily signature 720 734 - -
Chy03g01604 1379 PRINTS P-type cation-transporting ATPase superfamily signature 982 992 - -
Chy03g01604 1379 PRINTS P-type cation-transporting ATPase superfamily signature 1089 1101 - -
Chy03g01604 1379 SUPERFAMILY Calcium ATPase, transduction domain A 499 610 IPR008250 -
Chy03g01604 1379 SUPERFAMILY HAD-like 953 1114 IPR036412 -
Chy03g01604 1379 MobiDBLite consensus disorder prediction 243 264 - -
Chy03g01604 1379 SFLD C1.7: P-type atpase like 701 1118 - -
Chy03g01604 1379 MobiDBLite consensus disorder prediction 74 134 - -
Chy03g01604 1379 Coils Coil 486 506 - -
Chy03g01604 1379 SUPERFAMILY Calcium ATPase, transmembrane domain M 376 1352 IPR023298 -
Chy03g01604 1379 CDD P-type_ATPase_SERCA 380 1351 - -
Chy03g01604 1379 MobiDBLite consensus disorder prediction 34 134 - -
Chy03g01604 1379 Pfam haloacid dehalogenase-like hydrolase 1052 1105 - -
Chy03g01604 1379 Pfam Cation transport ATPase (P-type) 790 899 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01604 Chy-Chr3:17967781 Chy02g02093 Chy-Chr2:25241361 4.58E-24 dispersed
Chy03g01603 Chy-Chr3:17965608 Chy03g01604 Chy-Chr3:17967781 1.95E-136 tandem
Chy01g01544 Chy-Chr1:21280697 Chy03g01604 Chy-Chr3:17967781 2.85E-95 transposed
Chy01g02112 Chy-Chr1:25821173 Chy03g01604 Chy-Chr3:17967781 2.65E-88 transposed
Chy04g01604 Chy-Chr4:22497670 Chy03g01604 Chy-Chr3:17967781 5.55E-87 transposed
Chy05g00853 Chy-Chr5:12274184 Chy03g01604 Chy-Chr3:17967781 1.97E-76 transposed
Chy05g01188 Chy-Chr5:16366841 Chy03g01604 Chy-Chr3:17967781 5.82E-55 transposed
Chy07g00189 Chy-Chr7:1548092 Chy03g01604 Chy-Chr3:17967781 1.29E-84 transposed
Chy12g00153 Chy-Chr12:1735861 Chy03g01604 Chy-Chr3:17967781 0 transposed
Chy03g01604 Chy-Chr3:17967781 Chy07g00196 Chy-Chr7:1589547 5.85E-18 wgd
Chy03g01604 Chy-Chr3:17967781 Chy07g01734 Chy-Chr7:21030238 1.71E-08 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01604 K05853 - csv:101211345 1942.16