Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01606 ATGCCGATGTACCAGCCTGCTACTACTTGGAGAGAAGGGGATCCGAAGCTCGTCGTTGGCTGCGGTACGCAGATCCTAGATCTGGAAACTGTGGTCAAAGATGGGATTCTCGGTGGAGGCGGTGGGATCATATGCGGAGGCGGTGGCGTTGGGGGTGGAGAGAAATTGGATCTGAAGGAGATGATTGAGGAGTTGGAATCGTCTGTAGAGGTTCCATCGGTGTTCATTTGTCCAATCTCTCTCGAGCCCATGCAAGATCCAGTGACCCTCTGCTCAGGCCAAACCTACGAGCGGTCCAACATTCTGAAATGGTTCTCTTTGGGGCATTTAACTTGTCCCACAACAATGCAAGAGCTTTGGGACGATTCCGTCACACCGAATCGGACCCTTCACCAGTTGATTCACACCTGGTTTTCCCAGAAGTATTTAGCATTGAAGAAGAGATCAGAGGATGTGCAAGGGAGAGTTTTAGAGCTGTTGGATTCGTTGAAAAAGGTCAAAGGTCAAGCTAGGGTTCAGTCCCTCAAAGATCTCCGACATATCGTCATTACCCATTCCTCCGCTAAGAAGATGGTGGTCGACAACGGCGGTGTCGCTCTAATATCTTCTCTTTTGGGTTCTTTCACTTCCCACGCAGTTGGGTCCGAAGCCTTGGGAATCCTCGTGAATTTAGATCTAAATTCAGAGTTAAAGAAGAATCTGATTCAGCCCACCAGAATATCTCTAATTGCAGATATATTAAACGAAGGGTCCATCGAAACCAAGATTAATTGTACAAAATTCTTCAAGATGTTGATCGTGGGTGAGGATTTAAAAACGGAGGACGTTTCGAGTTTAAGTCTCCTCGTCGGATTGTTGAGAATGGTGAAGGATCAGAGACACCCAAATGGTGCAACCGCCGGACTCAGTCTACTCCGAACACTCTGTTCAAACGAACCAATCAGGAAGCAACTCGTTAGCATCGGCGCCGTTGCGAAACTCGGCGGCACCCTCTCTAACTTAAACACCGATTGCTTGGAATCGGCGCTTTATATTCTCGACGTTTTGTCATCCCTTCCAGAGGGGAGATTAGCGTTGAAGAATTGTGAAGATACGATTAGAAATTTGGTGAAATTGTTGATGAAAGTATCAGAGATTTGTACTCAATTTGCGTTGTCAATTTTATGGGCAGTGTTCAAGCTAGCACCAGAGGAATGTGCGTTGCTCGCAGTGGAAGCTGGATTAGCAGCAAAATTGCTGCTTGTCATACAAAGTGGGTGCAATCCAGAGCTGAAACAGAGATCTGCAGAGCTATTAAAATTGTGTAGTCTAAATTACCCAGATTCAATCTTCATTTCTAAATCACGGACTTTTGGGAAATGA 1362 46.11 MPMYQPATTWREGDPKLVVGCGTQILDLETVVKDGILGGGGGIICGGGGVGGGEKLDLKEMIEELESSVEVPSVFICPISLEPMQDPVTLCSGQTYERSNILKWFSLGHLTCPTTMQELWDDSVTPNRTLHQLIHTWFSQKYLALKKRSEDVQGRVLELLDSLKKVKGQARVQSLKDLRHIVITHSSAKKMVVDNGGVALISSLLGSFTSHAVGSEALGILVNLDLNSELKKNLIQPTRISLIADILNEGSIETKINCTKFFKMLIVGEDLKTEDVSSLSLLVGLLRMVKDQRHPNGATAGLSLLRTLCSNEPIRKQLVSIGAVAKLGGTLSNLNTDCLESALYILDVLSSLPEGRLALKNCEDTIRNLVKLLMKVSEICTQFALSILWAVFKLAPEECALLAVEAGLAAKLLLVIQSGCNPELKQRSAELLKLCSLNYPDSIFISKSRTFGK* 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18012602 18015774 + Chy3G065860.1 Chy03g01606 223767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01606 453 Pfam U-box domain 71 141 IPR003613 GO:0004842|GO:0016567
Chy03g01606 453 PANTHER WDSAM1 PROTEIN 43 449 IPR045185 GO:0061630
Chy03g01606 453 SUPERFAMILY ARM repeat 160 441 IPR016024 -
Chy03g01606 453 Gene3D - 145 271 IPR011989 -
Chy03g01606 453 Gene3D - 272 445 IPR011989 -
Chy03g01606 453 SMART Ubox_2 74 137 IPR003613 GO:0004842|GO:0016567
Chy03g01606 453 CDD RING-Ubox_PUB 75 117 IPR045210 -
Chy03g01606 453 ProSiteProfiles U-box domain profile. 70 144 IPR003613 GO:0004842|GO:0016567
Chy03g01606 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 144 IPR013083 -
Chy03g01606 453 SUPERFAMILY RING/U-box 67 141 - -
Chy03g01606 453 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 43 449 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01606 - - - csv:101211594 824.313
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01606 Chy-Chr3:18012602 Chy06g01075 Chy-Chr6:8808161 1.04E-40 dispersed
Chy03g01606 Chy-Chr3:18012602 Chy07g00203 Chy-Chr7:1647917 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g01575 . 1 1043 U-box Gene Family AT5G15400 75.7 0.0e+00 1568.1
Chy11g00210 . 209 855 U-box Gene Family AT2G23140 66.0 6.6e-120 428.3
Chy03g01664 . 1 800 U-box Gene Family AT1G24330 55.4 5.2e-228 787.7
Chy10g00794 . 25 765 U-box Gene Family AT1G24330 57.7 4.7e-221 764.6
Chy03g01664 . 1 799 U-box Gene Family AT1G67530 55.2 3.5e-224 775.0
Chy10g00794 . 25 765 U-box Gene Family AT1G67530 56.3 7.9e-216 747.3
Chy02g00356 . 1 362 U-box Gene Family AT4G21350 62.1 1.0e-120 430.3
Chy04g00817 . 135 462 U-box Gene Family AT3G07360 54.4 2.2e-79 292.7
Chy09g00867 . 251 456 U-box Gene Family AT1G71020 53.1 3.1e-53 206.5
Chy10g01301 . 210 412 U-box Gene Family AT1G71020 51.9 8.7e-48 188.3
Chy12g00185 CCT 259 428 U-box Gene Family AT1G71020 57.8 1.5e-47 187.6
Chy12g00185 CCT 94 643 U-box Gene Family AT2G28830 57.9 1.7e-98 357.1
Chy12g00185 CCT 1 635 U-box Gene Family AT3G46510 68.3 2.0e-159 559.7
Chy11g01242 CCT 11 671 U-box Gene Family AT3G46510 64.0 8.6e-155 544.3
Chy10g01301 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Chy10g01301 . 9 619 U-box Gene Family AT3G54850 69.1 1.2e-166 583.6
Chy11g01242 CCT 13 650 U-box Gene Family AT3G54850 55.2 2.9e-112 402.9
Chy12g00185 CCT 9 632 U-box Gene Family AT3G54850 55.2 1.1e-103 374.4
Chy11g00773 . 92 644 U-box Gene Family AT5G42340 64.6 4.9e-118 422.2
Chy08g00584 . 9 671 U-box Gene Family AT5G01830 57.9 2.1e-196 682.6
Chy12g00056 . 1 714 U-box Gene Family AT1G29340 67.3 7.5e-245 843.6
Chy06g01338 . 27 443 U-box Gene Family AT5G37490 51.6 1.3e-111 400.2
Chy08g00534 . 4 423 U-box Gene Family AT3G52450 50.8 5.2e-116 414.8
Chy05g00202 CCT,ECH 13 412 U-box Gene Family AT2G35930 51.9 1.4e-115 413.3
Chy08g00534 . 4 423 U-box Gene Family AT2G35930 50.4 5.4e-115 411.4
Chy04g01856 . 7 321 U-box Gene Family AT2G35930 50.9 3.7e-79 292.4
Chy06g01075 . 9 424 U-box Gene Family AT3G19380 64.2 2.7e-146 515.4
Chy06g01075 . 1 424 U-box Gene Family AT1G49780 64.3 2.1e-151 532.3
Chy02g01040 . 1 407 U-box Gene Family AT5G64660 54.7 1.0e-121 433.7
Chy02g01040 . 1 407 U-box Gene Family AT5G09800 50.8 2.0e-106 382.9
Chy07g00203 . 1 445 U-box Gene Family AT3G49810 63.2 1.8e-151 532.7
Chy03g01606 . 1 449 U-box Gene Family AT3G49810 61.0 2.6e-147 518.8
Chy03g01606 . 1 449 U-box Gene Family AT5G65920 61.5 1.9e-145 512.7
Chy07g00203 . 1 445 U-box Gene Family AT5G65920 61.9 4.1e-145 511.5
Chy06g00167 CCT 1 874 U-box Gene Family AT2G45910 51.3 9.6e-228 786.9
Chy09g01031 . 25 808 U-box Gene Family AT4G25160 52.4 3.4e-225 778.5
Chy09g00312 . 39 554 U-box Gene Family AT5G40140 55.4 7.8e-93 338.2
Chy02g02552 . 27 537 U-box Gene Family AT5G40140 51.6 8.6e-68 255.0
Chy03g00609 . 4 815 U-box Gene Family AT1G76390 60.6 2.3e-266 915.2
Chy03g00609 . 13 815 U-box Gene Family AT1G20780 61.1 1.0e-274 943.0
Chy10g00794 . 25 775 U-box Gene Family AT1G27910 62.6 2.2e-255 878.6
Chy03g01664 . 1 803 U-box Gene Family AT1G27910 58.5 1.2e-253 872.8
Chy02g00840 . 1 593 U-box Gene Family AT5G67530 74.2 4.0e-260 894.0
Chy04g01907 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Chy06g00229 . 688 819 U-box Gene Family AT5G67530 56.1 1.4e-39 161.4
Chy09g01031 . 26 808 U-box Gene Family AT5G61550 50.5 1.6e-222 769.6
Chy06g00436 . 50 592 U-box Gene Family AT1G04510 70.7 7.4e-218 753.4
Chy06g00436 . 50 561 U-box Gene Family AT2G33340 69.6 5.6e-204 707.2
Chy04g00818 . 10 278 U-box Gene Family AT3G07370 66.5 1.3e-101 366.3
Chy04g01575 . 1 1043 U-box Gene Family AT5G15400 75.7 0.0e+00 1568.1
Chy11g00210 . 209 855 U-box Gene Family AT2G23140 66.0 6.6e-120 428.3
Chy03g01664 . 1 800 U-box Gene Family AT1G24330 55.4 5.2e-228 787.7
Chy10g00794 . 25 765 U-box Gene Family AT1G24330 57.7 4.7e-221 764.6
Chy03g01664 . 1 799 U-box Gene Family AT1G67530 55.2 3.5e-224 775.0
Chy10g00794 . 25 765 U-box Gene Family AT1G67530 56.3 7.9e-216 747.3
Chy02g00356 . 1 362 U-box Gene Family AT4G21350 62.1 1.0e-120 430.3
Chy04g00817 . 135 462 U-box Gene Family AT3G07360 54.4 2.2e-79 292.7
Chy09g00867 . 251 456 U-box Gene Family AT1G71020 53.1 3.1e-53 206.5
Chy10g01301 . 210 412 U-box Gene Family AT1G71020 51.9 8.7e-48 188.3
Chy12g00185 CCT 259 428 U-box Gene Family AT1G71020 57.8 1.5e-47 187.6
Chy12g00185 CCT 94 643 U-box Gene Family AT2G28830 57.9 1.7e-98 357.1
Chy12g00185 CCT 1 635 U-box Gene Family AT3G46510 68.3 2.0e-159 559.7
Chy11g01242 CCT 11 671 U-box Gene Family AT3G46510 64.0 8.6e-155 544.3
Chy10g01301 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Chy10g01301 . 9 619 U-box Gene Family AT3G54850 69.1 1.2e-166 583.6
Chy11g01242 CCT 13 650 U-box Gene Family AT3G54850 55.2 2.9e-112 402.9
Chy12g00185 CCT 9 632 U-box Gene Family AT3G54850 55.2 1.1e-103 374.4
Chy11g00773 . 92 644 U-box Gene Family AT5G42340 64.6 4.9e-118 422.2
Chy08g00584 . 9 671 U-box Gene Family AT5G01830 57.9 2.1e-196 682.6
Chy12g00056 . 1 714 U-box Gene Family AT1G29340 67.3 7.5e-245 843.6
Chy06g01338 . 27 443 U-box Gene Family AT5G37490 51.6 1.3e-111 400.2
Chy08g00534 . 4 423 U-box Gene Family AT3G52450 50.8 5.2e-116 414.8
Chy05g00202 CCT,ECH 13 412 U-box Gene Family AT2G35930 51.9 1.4e-115 413.3
Chy08g00534 . 4 423 U-box Gene Family AT2G35930 50.4 5.4e-115 411.4
Chy04g01856 . 7 321 U-box Gene Family AT2G35930 50.9 3.7e-79 292.4
Chy06g01075 . 9 424 U-box Gene Family AT3G19380 64.2 2.7e-146 515.4
Chy06g01075 . 1 424 U-box Gene Family AT1G49780 64.3 2.1e-151 532.3
Chy02g01040 . 1 407 U-box Gene Family AT5G64660 54.7 1.0e-121 433.7
Chy02g01040 . 1 407 U-box Gene Family AT5G09800 50.8 2.0e-106 382.9
Chy07g00203 . 1 445 U-box Gene Family AT3G49810 63.2 1.8e-151 532.7
Chy03g01606 . 1 449 U-box Gene Family AT3G49810 61.0 2.6e-147 518.8
Chy03g01606 . 1 449 U-box Gene Family AT5G65920 61.5 1.9e-145 512.7
Chy07g00203 . 1 445 U-box Gene Family AT5G65920 61.9 4.1e-145 511.5
Chy06g00167 CCT 1 874 U-box Gene Family AT2G45910 51.3 9.6e-228 786.9
Chy09g01031 . 25 808 U-box Gene Family AT4G25160 52.4 3.4e-225 778.5
Chy09g00312 . 39 554 U-box Gene Family AT5G40140 55.4 7.8e-93 338.2
Chy02g02552 . 27 537 U-box Gene Family AT5G40140 51.6 8.6e-68 255.0
Chy03g00609 . 4 815 U-box Gene Family AT1G76390 60.6 2.3e-266 915.2
Chy03g00609 . 13 815 U-box Gene Family AT1G20780 61.1 1.0e-274 943.0
Chy10g00794 . 25 775 U-box Gene Family AT1G27910 62.6 2.2e-255 878.6
Chy03g01664 . 1 803 U-box Gene Family AT1G27910 58.5 1.2e-253 872.8
Chy02g00840 . 1 593 U-box Gene Family AT5G67530 74.2 4.0e-260 894.0
Chy04g01907 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Chy06g00229 . 688 819 U-box Gene Family AT5G67530 56.1 1.4e-39 161.4
Chy09g01031 . 26 808 U-box Gene Family AT5G61550 50.5 1.6e-222 769.6
Chy06g00436 . 50 592 U-box Gene Family AT1G04510 70.7 7.4e-218 753.4
Chy06g00436 . 50 561 U-box Gene Family AT2G33340 69.6 5.6e-204 707.2
Chy04g00818 . 10 278 U-box Gene Family AT3G07370 66.5 1.3e-101 366.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001278 2 3 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 3 2 1 74