Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01606 ATGCCGATGTACCAGCCTGCTACTACTTGGAGAGAAGGGGATCCGAAGCTCGTCGTTGGCTGCGGTACGCAGATCCTAGATCTGGAAACTGTGGTCAAAGATGGGATTCTCGGTGGAGGCGGTGGGATCATATGCGGAGGCGGTGGCGTTGGGGGTGGAGAGAAATTGGATCTGAAGGAGATGATTGAGGAGTTGGAATCGTCTGTAGAGGTTCCATCGGTGTTCATTTGTCCAATCTCTCTCGAGCCCATGCAAGATCCAGTGACCCTCTGCTCAGGCCAAACCTACGAGCGGTCCAACATTCTGAAATGGTTCTCTTTGGGGCATTTAACTTGTCCCACAACAATGCAAGAGCTTTGGGACGATTCCGTCACACCGAATCGGACCCTTCACCAGTTGATTCACACCTGGTTTTCCCAGAAGTATTTAGCATTGAAGAAGAGATCAGAGGATGTGCAAGGGAGAGTTTTAGAGCTGTTGGATTCGTTGAAAAAGGTCAAAGGTCAAGCTAGGGTTCAGTCCCTCAAAGATCTCCGACATATCGTCATTACCCATTCCTCCGCTAAGAAGATGGTGGTCGACAACGGCGGTGTCGCTCTAATATCTTCTCTTTTGGGTTCTTTCACTTCCCACGCAGTTGGGTCCGAAGCCTTGGGAATCCTCGTGAATTTAGATCTAAATTCAGAGTTAAAGAAGAATCTGATTCAGCCCACCAGAATATCTCTAATTGCAGATATATTAAACGAAGGGTCCATCGAAACCAAGATTAATTGTACAAAATTCTTCAAGATGTTGATCGTGGGTGAGGATTTAAAAACGGAGGACGTTTCGAGTTTAAGTCTCCTCGTCGGATTGTTGAGAATGGTGAAGGATCAGAGACACCCAAATGGTGCAACCGCCGGACTCAGTCTACTCCGAACACTCTGTTCAAACGAACCAATCAGGAAGCAACTCGTTAGCATCGGCGCCGTTGCGAAACTCGGCGGCACCCTCTCTAACTTAAACACCGATTGCTTGGAATCGGCGCTTTATATTCTCGACGTTTTGTCATCCCTTCCAGAGGGGAGATTAGCGTTGAAGAATTGTGAAGATACGATTAGAAATTTGGTGAAATTGTTGATGAAAGTATCAGAGATTTGTACTCAATTTGCGTTGTCAATTTTATGGGCAGTGTTCAAGCTAGCACCAGAGGAATGTGCGTTGCTCGCAGTGGAAGCTGGATTAGCAGCAAAATTGCTGCTTGTCATACAAAGTGGGTGCAATCCAGAGCTGAAACAGAGATCTGCAGAGCTATTAAAATTGTGTAGTCTAAATTACCCAGATTCAATCTTCATTTCTAAATCACGGACTTTTGGGAAATGA 1362 46.11 MPMYQPATTWREGDPKLVVGCGTQILDLETVVKDGILGGGGGIICGGGGVGGGEKLDLKEMIEELESSVEVPSVFICPISLEPMQDPVTLCSGQTYERSNILKWFSLGHLTCPTTMQELWDDSVTPNRTLHQLIHTWFSQKYLALKKRSEDVQGRVLELLDSLKKVKGQARVQSLKDLRHIVITHSSAKKMVVDNGGVALISSLLGSFTSHAVGSEALGILVNLDLNSELKKNLIQPTRISLIADILNEGSIETKINCTKFFKMLIVGEDLKTEDVSSLSLLVGLLRMVKDQRHPNGATAGLSLLRTLCSNEPIRKQLVSIGAVAKLGGTLSNLNTDCLESALYILDVLSSLPEGRLALKNCEDTIRNLVKLLMKVSEICTQFALSILWAVFKLAPEECALLAVEAGLAAKLLLVIQSGCNPELKQRSAELLKLCSLNYPDSIFISKSRTFGK* 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18012602 18015774 + Chy3G065860.1 Chy03g01606 223767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01606 453 Pfam U-box domain 71 141 IPR003613 GO:0004842|GO:0016567
Chy03g01606 453 PANTHER WDSAM1 PROTEIN 43 449 IPR045185 GO:0061630
Chy03g01606 453 SUPERFAMILY ARM repeat 160 441 IPR016024 -
Chy03g01606 453 Gene3D - 145 271 IPR011989 -
Chy03g01606 453 Gene3D - 272 445 IPR011989 -
Chy03g01606 453 SMART Ubox_2 74 137 IPR003613 GO:0004842|GO:0016567
Chy03g01606 453 CDD RING-Ubox_PUB 75 117 IPR045210 -
Chy03g01606 453 ProSiteProfiles U-box domain profile. 70 144 IPR003613 GO:0004842|GO:0016567
Chy03g01606 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 144 IPR013083 -
Chy03g01606 453 SUPERFAMILY RING/U-box 67 141 - -
Chy03g01606 453 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 43 449 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01606 Chy-Chr3:18012602 Chy06g01075 Chy-Chr6:8808161 1.04E-40 dispersed
Chy03g01606 Chy-Chr3:18012602 Chy07g00203 Chy-Chr7:1647917 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01606 - - csv:101211594 824.313