Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01612 ATGGAGAAAATATGCGTTGCTGTTCGTTTGAGACCATCTGTATCTCAAGATTCGCTCCATGGTTCGCTCCATGGAACGTATTGGAAGATTGACCACAATCGAATTTCGCTTCACAGACCTCACGGCACACCAATCTCCGGCAATTCATATGCTTTTGATCATGTGTTGGATGAAAGTTGTACTAACGGCAGTGTTTATGAACTCGTTGTTCGGGATATCATCCATGCTGCAGTTGACGGTTTTAATGGAACTGCTTTCGCTTATGGACAGACCAGCAGTGGAAAAACTTTCACCATGAATGGTTCTGAAACCGACGCCGGAGTTATTCACAGAGCTGTGAAAGACGTGTTCGAAAAAATTCACGCGACGTCAGATCGAGAATTTCTGATTAGAGTTTCTTACATGGAAATTTATAACGAGGAAATCAATGATCTATTTGCTGTTGAGAACAATAAATTGCCGATTCATGAGAGCTTGGAGCGCGGGATATTTGTTGCAGGTCTCAAGGAGGAAATTGTCAGTAATGCTGATCAAGTATTAAAGCTCATCAAGCAGGGTGAAGTAAACAAACACTTTGGTGAAACAAATATGAATGCGAGGAGCAGTAGGTCACACACAATATTCAGAATGGTGATTGAAAGCAAGGGGAAGGAAATTGGTGAAAATTTGAGTGCGGATTCAATACGCGTTTCTGTGTTGAATTTGGTAGACCTAGCGGGGTCTGAGCGTATTGCTAAAACTGGAGCTGAAGGAACACGTTTGAAAGAAGGGAAGCATATCAATAAGAGTTTAATGATTCTTGGGAATGTTATTAATAAGTTAAGCGAGGGGGTTAGGCAGAGAGGGCACATTCCCTATCGAGACAGTAAGCTAACGCGCATACTTCAACCAGCTCTGGGTGGCAATGCTAAGACTTCAATAATATGCACCATAGCTCCAGAAGAGGTTCATATAGAGGAAACAAAAGGAACTCTCCAGTTTGCTAGCAGAGCGAAGCGGATCACCAATTGTGTTCAAGTGAATGAGATTTTGACAGATGCAGCGTTATTGAAGCGTCAGAATCAAGAGATAGAGGAACTGCGTAAAAAACTTCAGGGATCACATGCGGAAGTACTTGAGCAGGAGGTTTTGAAATTAAGGAACGATTTATTGAAGTTTGAACTTGAGCGGGAGAAGTTGCAAATGGAACTTCAAGAGGAAAGGAACTCACATAAAGAACGCGATCAACGTATCAGGGAGCAACAGATGAAAATAGAAAGTCTCAATAATCTTGTCAATCTTTCGGAGTCTCTACAAAGCTCCAATCATAGTCGAGAACAAGATTCTGTGAAAAACATTCAAAGGGAAGATTTTGGTGGCAGTTGTAATAAAAGCCACGAAGATGGATTTGTAACACCTTGTTTCAAAGCACCTCCTAATGCCTTTGTTGCCAAGCGATCTGATTACTCTATGCCTCCTGAGTTTAGCCCTCTTCCAGATGCTTTCAGTAATGTTGCAGATGAAGATGCTTGGTTGAAATTGAATAAAGGTTTTGTAGCGGACCTTGATTCACTTCAAACGACTCCTGCAAGAAAATTGCAATCGTTTCCATTCAATGAAATAACTCCTGGTCAGGGTCTCACCAATGAGAATCATAAACAAGAAATTCAAAATCTTGAGAGAAAACTAGAGCATGCCATCATGGAGAAAAATAAACTTCAGGAAAAGCATGAGGAGCAAATTCTTGTCAACAAGAAACTAATGGCAGAGATATCAGAGATTAAACAAAAACAACGAGTAATCGAGGAACTTCCGAAAAAGTTGCCCAATTCTTTGGCAATGTGCAAAGAAGTTTACATGGAAATCCTATCTTCTCTCCAGAGTGCCAAAGATGACGAGAAACCCTCAATAACAAAATTTCTGTCAAGCACCAGTGAAATTGGAACGTGTCTTTTTACTACTCTGGAGGCTCATCTATCTACCGCCATCAATGATTCACTTATTCAAGAACAATATGATGTACTTCGTGGGAGCATAAACAACATAATGGAATCCCTTATGTTATCAGAAACATCAAAGGGGTGTGCTGAAGATGACTTTTTGAAGGAAAGTTTGAGTATTGAACTTGATGATGTTAAGGAAAGATGCCATGGCCTTGAGAAAGAGCTAGACTCCAACAACCAACGTTTGGAACTATCCAAGCAACAAAATGACAACTTAGAAAGAGAGTTGAAACTTATGAAAGATGAAAGAGATTCTTTACGTAAAATGGTGTCAGAATGTGTTCAAAAGCTAGAGATGGAGAAGGAGCTGAAAGAAACTGCATTAAAGGAACTGAACAGTGAAATCCAGAGACGAAGTGATTTAGGAGAAGGAATTAAGCGATTCAGTGCAGCATTTGCCTCTCGACACAAGTCATTCATGTCATTCAACAGTGAGATAATGTCCAAAACTGAGGAATTGAGGACTAATAATTGGGTGGTTGTTCCTGTTCCCAAATCTCTTGGGGGTTGA 2493 40.43 MEKICVAVRLRPSVSQDSLHGSLHGTYWKIDHNRISLHRPHGTPISGNSYAFDHVLDESCTNGSVYELVVRDIIHAAVDGFNGTAFAYGQTSSGKTFTMNGSETDAGVIHRAVKDVFEKIHATSDREFLIRVSYMEIYNEEINDLFAVENNKLPIHESLERGIFVAGLKEEIVSNADQVLKLIKQGEVNKHFGETNMNARSSRSHTIFRMVIESKGKEIGENLSADSIRVSVLNLVDLAGSERIAKTGAEGTRLKEGKHINKSLMILGNVINKLSEGVRQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEVHIEETKGTLQFASRAKRITNCVQVNEILTDAALLKRQNQEIEELRKKLQGSHAEVLEQEVLKLRNDLLKFELEREKLQMELQEERNSHKERDQRIREQQMKIESLNNLVNLSESLQSSNHSREQDSVKNIQREDFGGSCNKSHEDGFVTPCFKAPPNAFVAKRSDYSMPPEFSPLPDAFSNVADEDAWLKLNKGFVADLDSLQTTPARKLQSFPFNEITPGQGLTNENHKQEIQNLERKLEHAIMEKNKLQEKHEEQILVNKKLMAEISEIKQKQRVIEELPKKLPNSLAMCKEVYMEILSSLQSAKDDEKPSITKFLSSTSEIGTCLFTTLEAHLSTAINDSLIQEQYDVLRGSINNIMESLMLSETSKGCAEDDFLKESLSIELDDVKERCHGLEKELDSNNQRLELSKQQNDNLERELKLMKDERDSLRKMVSECVQKLEMEKELKETALKELNSEIQRRSDLGEGIKRFSAAFASRHKSFMSFNSEIMSKTEELRTNNWVVVPVPKSLGG* 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18048479 18053332 + Chy3G065920.1 Chy03g01612 223773

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01612 830 ProSiteProfiles Kinesin motor domain profile. 3 334 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy03g01612 830 Coils Coil 340 410 - -
Chy03g01612 830 CDD KISc_CENP_E 3 334 - -
Chy03g01612 830 Pfam Kinesin motor domain 9 334 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy03g01612 830 Coils Coil 542 597 - -
Chy03g01612 830 ProSitePatterns Kinesin motor domain signature. 231 242 IPR019821 GO:0003777|GO:0005524|GO:0007018
Chy03g01612 830 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 365 IPR027417 -
Chy03g01612 830 SMART kinesin_4 1 342 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy03g01612 830 Coils Coil 755 775 - -
Chy03g01612 830 PANTHER CENTROMERE PROTEIN E 2 814 - -
Chy03g01612 830 PANTHER CENTROMERE PROTEIN E 2 814 - -
Chy03g01612 830 Gene3D Kinesin motor domain 1 366 IPR036961 -
Chy03g01612 830 PRINTS Kinesin heavy chain signature 195 212 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy03g01612 830 PRINTS Kinesin heavy chain signature 80 101 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy03g01612 830 PRINTS Kinesin heavy chain signature 232 250 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy03g01612 830 PRINTS Kinesin heavy chain signature 284 305 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy03g01612 830 Coils Coil 695 750 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01612 K11498 CENPE; centromeric protein E - csv:101212317 1545.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00742 Chy-Chr1:5441917 Chy03g01612 Chy-Chr3:18048479 1.77E-83 dispersed
Chy03g01612 Chy-Chr3:18048479 Chy04g01657 Chy-Chr4:22928394 5.19E-149 dispersed
Chy09g01147 Chy-Chr9:13725180 Chy03g01612 Chy-Chr3:18048479 3.07E-58 dispersed
Chy11g01606 Chy-Chr11:22615657 Chy03g01612 Chy-Chr3:18048479 8.31E-62 dispersed
Chy12g00148 Chy-Chr12:1669469 Chy03g01612 Chy-Chr3:18048479 2.52E-72 dispersed
Chy03g01612 Chy-Chr3:18048479 Chy01g00750 Chy-Chr1:5556542 7.96E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g616 . . . . . . . . . Cmo12g00547 . . . Car12g00552 . . Cpe07g00529 Bhi04g00452 . . . . . . Cla08g01638 Cam08g2142 Cec08g1729 Cco08g1849 Clacu08g1830 . Cre08g1613 . . Cone17ag0899 Cone20ag0241 . . . Cme03g02122 . . . . . . . . . . . Cma12g00609 . . . . . . . . . . . . . . . . . . . Lsi08g01544 Csa02g01874 Chy03g01612 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012517 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 28