Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01617 ATGGCTTCTTGGTGGGGAAGAGAAAGTCACAAGGGAACCCCTGTCGTTGTGAAGATGGAAAATCCCAACTGGTCAATAGTTGAAGTTGAAAGTCCTTCCGACGATGACTTCATAATCGGCGCCGAGTCGCCACCGGGTCGAGCCCGAGACAAGGGACGAGGCAAAAATGCCAAACAGCTCACTTGGGTTCTTCTTCTTAAAGCTCACAAAGCCGCCGGTTGTTTAACCTCCATTGGCTCTGCATTGGTCAACATCGTCACCGTCGTTAAACGCCGTCTTGCTTCTGGAAGAACTGACGCCGACACGGACGCCGACAATGACAACGCTGACGGCGGCGTGAGGGAGAACCCAACTGTTAAAACCAGGTTCTATTTGTTTATTAAGGTTTTCCTTTGGCTGTCGGTGCTTCTGTTAGGGTTTGAGTTGGCGGCTTATTATAAAGGTTGGCATTTTGAGGCACCACATCTTCAATTGGACTACTTGTGGACAACCCCATTTGGGGTTAAGGATGCTTTTGACTGGTTTTATTCCAAATGGGTTTTAATTCGGGTTGCATATTTTGCTCCTCCTCTACAGTTTTTAGCCAATGTTTGTATAGTGTTGTTCCTCATTCAAACTTTGGATAGGCTTATTCTTTGTCTGGGTTGTTTCTGGATTCGATTCAAGAAAATCAAACCCGTTCCTAAAGTTGCTGCTATGGATCTTGAGTCTGGTGAAACTGGCTACTTCCCTATGGTTCTTGTTCAGATTCCAATGTGCAATGAGAAAGAGGTTTATCAGCAATCAATTGCTGCTGTCTGCAACTTGGACTGGCCAAAAGACAAGTTACTGATTCAGGTTCTTGATGACTCGGATGATCCAATCACCCAATTGCTGATCAAAGAGGAGGTACATAAATGGCAACAACTCGATGCCAAAATTGAATATCGACATCGGGTGATCCGAGAGGGATATAAGGCTGGCAATCTCAAGTCTGCCATGAATTGTAGCTCTGTCAAAGACTATGAGTTTGTTGCTATCTTTGATGCTGATTTTCAGCCTGCTTCTGATTTCCTCAAAAGAACAGTTCCTCATTTTAAGGATAATGAGGAACTAGGACTCGTTCAAGCACGATGGTCATTCGTGAACAAAGACGAGAACTTGCTAACCAGACTACAGAATATTAACTTAGCCTTCCATTTTGAAGTAGAGCAACAAGTGAATGGTGTGTTTCTCAATTTCTTTGGATTCAACGGAACTGCTGGTGTTTGGAGGATAAAGGCTCTTGAAGAAGCCGGTGGCTGGTTGGAAAGGACCACTGTCGAGGACATGGACATTGCCGTCCGTGCTCATCTTCATGGTTGGAAATTCATATTCCTCAATGACGTAGAGTGCCAATGTGAATTACCAGAATCGTATGAAGCATATAGAAAACAACAGCATAGATGGCATTCGGGACCAATGCAACTGTTTCGACTTTGTTTGCCCGATGTAGTTCGGTCGAAGATTGGCATATCAAAGAAATTCAATTTGATCTTCCTGTTTTTTCTCTTACGGAAGCTGATACTGCCATTTTATTCATTTACCCTCTTCTGCATAATTCTCCCAATGACGATGTTTGTTCCTGAAGCTGAGTTGCCGGCGTGGGTTGTATGTTACATTCCAGCTACAATGTCCTTTCTCAACATCCTTCCAGCACCAAAGTTCTTCCCCTTCATTGTTCCTTACCTCCTCTTTGAGAATACTATGTCAGTAACTAAGTTTAACGCAATGGTCTCGGGACTCTTCCAGCTAGGTAGTGCATATGAGTGGGTTGTTACGAAGAAATCAGGCCGCTCGTCTGAGGGTGATCTTTCCTCAATGGTTGAGAAGAAAAGGATGAACTCTGAAAAGAGTGTCTCAGCAAACAACCTTGAGGAGATCGAATTAATCCAAAAACAGGACAAGAAGTTGCCAAGGAAGAAGCATAACAGAATATACATGAAGGAGCTAGCACTAGCTTTCCTTCTTTTAACAGCCTCAGCTAGAAGCCTCCTCTCAGCTCAAGGGATTCATTTTTACTTCCTGCTGTTTCAGGGAATATCCTTCCTTCTTGTTGGTCTAGACTTGATCGGCGAGCAGGTTGTTTAA 2109 43.91 MASWWGRESHKGTPVVVKMENPNWSIVEVESPSDDDFIIGAESPPGRARDKGRGKNAKQLTWVLLLKAHKAAGCLTSIGSALVNIVTVVKRRLASGRTDADTDADNDNADGGVRENPTVKTRFYLFIKVFLWLSVLLLGFELAAYYKGWHFEAPHLQLDYLWTTPFGVKDAFDWFYSKWVLIRVAYFAPPLQFLANVCIVLFLIQTLDRLILCLGCFWIRFKKIKPVPKVAAMDLESGETGYFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKDKLLIQVLDDSDDPITQLLIKEEVHKWQQLDAKIEYRHRVIREGYKAGNLKSAMNCSSVKDYEFVAIFDADFQPASDFLKRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQNINLAFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEEAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDVVRSKIGISKKFNLIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAELPAWVVCYIPATMSFLNILPAPKFFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSAYEWVVTKKSGRSSEGDLSSMVEKKRMNSEKSVSANNLEEIELIQKQDKKLPRKKHNRIYMKELALAFLLLTASARSLLSAQGIHFYFLLFQGISFLLVGLDLIGEQVV* 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18105672 18108212 - Chy3G065970.1 Chy03g01617 223778

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01617 702 PANTHER - 8 701 - -
Chy03g01617 702 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 12-RELATED 8 701 - -
Chy03g01617 702 SUPERFAMILY Nucleotide-diphospho-sugar transferases 246 535 IPR029044 -
Chy03g01617 702 Pfam Glycosyl transferase family group 2 338 544 IPR001173 -
Chy03g01617 702 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 237 461 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01617 - - - csv:101203245 1354.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01617 Chy-Chr3:18105672 Chy04g00287 Chy-Chr4:2598661 0 dispersed
Chy03g01617 Chy-Chr3:18105672 Chy07g00213 Chy-Chr7:1721438 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy11g00424 . 229 390 REM Transcription Factor Family AT1G49480 71.0 1.8e-56 216.1
Chy04g00287 . 1 691 REM Transcription Factor Family AT2G24630 77.1 0.0e+00 1079.7
Chy09g00318 . 6 668 REM Transcription Factor Family AT2G24630 68.8 1.1e-264 909.4
Chy07g00213 . 1 707 REM Transcription Factor Family AT2G24630 64.2 6.9e-264 906.7
Chy03g01617 . 5 700 REM Transcription Factor Family AT2G24630 65.8 2.1e-257 885.2
Chy01g01422 . 5 695 REM Transcription Factor Family AT2G24630 62.0 2.9e-246 848.2
Chy04g00287 . 1 691 REM Transcription Factor Family AT2G24630 77.1 0.0e+00 1079.7
Chy09g00318 . 6 668 REM Transcription Factor Family AT2G24630 68.8 1.1e-264 909.4
Chy07g00213 . 1 707 REM Transcription Factor Family AT2G24630 64.2 6.9e-264 906.7
Chy03g01617 . 5 700 REM Transcription Factor Family AT2G24630 65.8 2.1e-257 885.2
Chy01g01422 . 5 695 REM Transcription Factor Family AT2G24630 62.0 2.9e-246 848.2
Chy04g00287 . 1 691 REM Transcription Factor Family AT2G24630 77.1 0.0e+00 1079.7
Chy09g00318 . 6 668 REM Transcription Factor Family AT2G24630 68.8 1.1e-264 909.4
Chy07g00213 . 1 707 REM Transcription Factor Family AT2G24630 64.2 6.9e-264 906.7
Chy03g01617 . 5 700 REM Transcription Factor Family AT2G24630 65.8 2.1e-257 885.2
Chy01g01422 . 5 695 REM Transcription Factor Family AT2G24630 62.0 2.9e-246 848.2
Chy11g00424 . 229 390 REM Transcription Factor Family AT1G49480 71.0 1.8e-56 216.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002112 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 4 2 2 2 2 2 2 2 2 2 3 2 1 65