Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01625 ATGGAAGATGATGAGTACAAGGTTCATGGTGATAGGTGTAGGGGAAATTTCTTGTACAATTCAGTACCTGTTTTAGCCACTAATTCTTCATCTCCTGTGGGCAATTTCGTCGGAGCTCCGCCGGAGGTGGCTGCAAAACTTACTTCGGTACAGGAGGAATTTGAGAGACAGCGATCTTCAATGGCGACCGCTGAGGGTTCATCAATTGACCCTGAACTTGATCAATTCATGGAAGCTTATTATGGGATGTTGGTGAAGTATAGAGAAGAGTTAAGAAGGCCAATTCAAGAAGCTGTAGATTTTATGCACAGAATTGAATCTCAGCTTAATACTCTCTGCAATGGCTCCTTTCAAATCTTACCATCTGGAAGAGAAGGGAAGAGGGAAGGAATGGGATCATCAACGGAGGAGGAAGCTGAGAAAGGCGGAGAGGAGGAAAGAGAGATAGAAGAAGATCAAATCGACCCACGAGCAGAAGAAAGAGAGCTTAAGAATCACTTACTAAAAAAATACAGTGGTTATCTTAGCAGTTTAAAGCAAGAACTTTCTAAGAAAAAGAAGAAAGGAAAACTCCCTAAAGACGCAAGACAACAACTCCTCCGTTGGTGGGAACTGCATAACAAATGGCCATACCCATCGGAGGCAGAAAAATTGGCGCTGGCGGAATCAACTGGGCTTGACCAGAAACAGATAAATAATTGGTTTATAAACCAAAGGAAAAGGCACTGGAAGCCTTCTGAGGATGTGCAGTTTATGGGTATGGAGGGGTTTTACCATCCCAATGCTGCTGCTTTTTACTTTGATCATGGCCATTTCATGGCTGATTCTCATTATCGTTTGGGTCCATGA 849 43.11 MEDDEYKVHGDRCRGNFLYNSVPVLATNSSSPVGNFVGAPPEVAAKLTSVQEEFERQRSSMATAEGSSIDPELDQFMEAYYGMLVKYREELRRPIQEAVDFMHRIESQLNTLCNGSFQILPSGREGKREGMGSSTEEEAEKGGEEEREIEEDQIDPRAEERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQQLLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFMGMEGFYHPNAAAFYFDHGHFMADSHYRLGP* 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18173550 18177233 - Chy3G066050.1 Chy03g01625 223786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01625 282 CDD homeodomain 194 246 IPR001356 GO:0003677
Chy03g01625 282 Pfam Homeobox KN domain 202 241 IPR008422 GO:0003677|GO:0006355
Chy03g01625 282 SMART KNOX2_2 63 114 IPR005541 GO:0003677|GO:0005634
Chy03g01625 282 SMART ELK_2 72 92 IPR005539 GO:0003677
Chy03g01625 282 SMART ELK_2 162 183 IPR005539 GO:0003677
Chy03g01625 282 MobiDBLite consensus disorder prediction 120 159 - -
Chy03g01625 282 Gene3D - 179 252 - -
Chy03g01625 282 ProSiteProfiles ELK domain profile. 162 182 IPR005539 GO:0003677
Chy03g01625 282 ProSitePatterns 'Homeobox' domain signature. 220 243 IPR017970 GO:0000981|GO:0006355
Chy03g01625 282 Pfam ELK domain 162 183 IPR005539 GO:0003677
Chy03g01625 282 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 37 273 - -
Chy03g01625 282 SUPERFAMILY Homeodomain-like 183 255 IPR009057 -
Chy03g01625 282 Pfam KNOX2 domain 70 113 IPR005541 GO:0003677|GO:0005634
Chy03g01625 282 ProSiteProfiles 'Homeobox' domain profile. 182 245 IPR001356 GO:0003677
Chy03g01625 282 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 37 273 - -
Chy03g01625 282 SMART HOX_1 184 249 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01625 Chy-Chr3:18173550 Chy03g01721 Chy-Chr3:18711428 5.16E-60 dispersed
Chy03g01625 Chy-Chr3:18173550 Chy07g00220 Chy-Chr7:1794759 4.58E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17766 PF03791 KNOX2 1.60E-23 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01625 - - csv:101219997 452.21