Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01626 ATGATCGCTGAATCAATGCTCCTCAGTCCCACCTCTCACATTTCAACCTGGGACTCCCTCGACGATCCCTCCCCCGCAATCTCTTCCTATTTCTCCACCGCCCACGTCTCCCCCCTCGATTCACCTACGGCGGCGCTCATGGACTTCGATTCCTCCTTATGGGAAGATCCTGACTTGCCGGCGCCTGTGGACGCCTATTCCTGTGACCAGTTCCGGATGTATGAGTTCAAAGTCCGCTCCTGCGCACGTGGCAGGTCGCACGATTGGACCAAATGTCCGTACGCTCACACCGGCGAGAAGGCTCGCCGTCGAGATCCGAGGAAGTTTAACTATTCCGGCGCCGAGTGCCCGGATTTACGCCATGGGTGTTGTAAAAAAGGAGACGCCTGCGAGTACGCTCATGGAACTTTTGAGATTTGGCTCCACCCAGACCGATACCGGACTCAACCGTGCCGTGACGGAACTGGCTGTCGCCGGCGGGTCTGTTTTTTCGCCCACACGTCGGAGCAACTCCGGATTCCGGGGAAACAAAGTGTCAGGTCTCCACGAGCGAGAGAAATGGCTATCCCTGCTGTGTCATCGCCGACATCGATCCTGTTATCGCCGACTTCGGACTCGCCACCTTTGTCTCCAATCAGCCCTGTAATCAGCGGCGGCGAATCATTCAGCAGATTAGTTGCATTGATGCACAGTCTCCGCCTAGATGAATTAAAAACGAATCCTGGTGTCTCCAGCTTCAGTCCAAATCTCCGTCGGAGCTCCGGTGCAGCATTTGATTTATGGGATAGAGAAAATGAAGAAGAACCAGCAATGGAAAGAGTAGAATCAGGAAGAAATCTACGAGCCCAAATGTATGCCAAACTAATGAGAGAGAATTCAGTGGACCGTGTCCGGCCAATGATATCCGCCGGATCTCTGAACTAA 924 53.79 MIAESMLLSPTSHISTWDSLDDPSPAISSYFSTAHVSPLDSPTAALMDFDSSLWEDPDLPAPVDAYSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLRHGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVRSPRAREMAIPAVSSPTSILLSPTSDSPPLSPISPVISGGESFSRLVALMHSLRLDELKTNPGVSSFSPNLRRSSGAAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPMISAGSLN* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18186541 18187464 + Chy3G066060.1 Chy03g01626 223787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01626 307 PANTHER UNKEMPT FAMILY MEMBER 7 242 IPR045234 -
Chy03g01626 307 PANTHER UNKEMPT FAMILY MEMBER 249 303 IPR045234 -
Chy03g01626 307 SMART c3hfinal6 145 168 IPR000571 GO:0046872
Chy03g01626 307 SMART c3hfinal6 110 136 IPR000571 GO:0046872
Chy03g01626 307 Gene3D - 107 178 - -
Chy03g01626 307 ProSiteProfiles Zinc finger C3H1-type profile. 110 137 IPR000571 GO:0046872
Chy03g01626 307 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 249 303 - -
Chy03g01626 307 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 242 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01185 Chy-Chr2:8505957 Chy03g01626 Chy-Chr3:18186541 6.37E-86 dispersed
Chy03g01626 Chy-Chr3:18186541 Chy05g01423 Chy-Chr5:18195541 8.85E-74 dispersed
Chy03g01626 Chy-Chr3:18186541 Chy07g00223 Chy-Chr7:1831517 2.51E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17767 None None None None Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01626 - - csv:101214248 596.275