Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01640 ATGTCTACTGCCCTGCAACGAATCGATATGGGAGATGCTTGTCTGGGTCCCTCTGGTAATGCTGAGTTTCAAAATCAATTGGCAGTAGCCATTCCTATTTCTCTGTTTCAATCTACCTCTCTTGCTCCAGTGAATGATATTCGTGGAAATACGAAAGATTCAGCATTTCCAGACCCACAGTTCCAGCAATTAGAAACCTTGAGAACGTGCTTCTTACACAGTTACTCTAATGCTTCAAATTCTTCATTTGCAAGTTCTCTGATCTGTGAAGGTGATGAGTCTCTATGTAATGCAAATAATAAGTGGGAAAGCGATAGGTTTCATTGTATTCAGCAACTTTCTGGGGAGAATCCGGAAACATCCGATTCCCAGACCGTCTTGTCCATGGAACATTTGCACCAGAATGGCTGGATGTCATCTAACACTATGAACTCCAAGTTATGGAATGAGCTTTCTCTAAGCCTTGCTACAACCGAACCCGTCCTCAGTGGAGGAACCGATTTCCTGGACCAGTATTCACAGTTGACTTTTTCTGGTGCTACTCAACCTTGCTTGAACAGCACAGAATTAGCCTCGAACCTGAATTCAGGAAGCTCTAGGGACCTCTCTCTGAGTTATGGATTTGGTAATTCTGTTCGCCTTTCTCGAGCAATAGCAGGATCTAGATATCTTTCGGTCATTCAAGATGTACTTTCTCAAATAGCAAGCTATCCACTGGAAAGCTCAGATCAACTTAGTCATTCAACTACTGCAATTGGGTTTGTGCCGTTCTCATCATCAAGTTCCCTGGATGAGGCAACGATTGAATATGGTTCTGATGTAACTGGTAGATACAGTTCTCAAATGGAGCCTGAATGGCAAAATCTATCTGTTGATGCCAAGAAGTCCCATCTGTTGACTCTACTACAATTGATTGATGAGAGGTACACTCAATGCTTGGATGAGATTCATACCGTGACTTCTGCGTTTCATGCTGCTACTGATTTGGACCCTCGCTTGCATACTCGATATACTCTCCAGACGATCACTTCGGTGTATAAAAACCTGAGGGAGAAGATTACCAGTTGTATTTTTGCTATAGGAAAGCATTCTAACGCAGCGTGCACCAAGGAGAAGGAAAAATCCTTTGAGGCAACATTCTTACAGAAGCAGTGGGCTCTCCAGCAGTTGAAAAGGAAAGATAATCAATTATGGAGGCCACAGAGAGGCTTGCCTGAAAAATCTGTCTCCGTTCTAAGGGCATGGATGTTTCAAAATTTTCTCCATCCGTACCCCAAGGACACAGAGAAGCATTTACTTGCAGTAAAAAGTGGATTAACTAGAAATCAGGTGTCTAATTGGTTCATCAATGCTCGTGTCCGATTGTGGAAACCGATGATCGAGGAAATGTATGCTGAAATGAGCAGAAGAAAATCCAGTCAAAATGAGGAGGGAATCGAGAGAATTCATTGTCCCAGATAA 1461 42.71 MSTALQRIDMGDACLGPSGNAEFQNQLAVAIPISLFQSTSLAPVNDIRGNTKDSAFPDPQFQQLETLRTCFLHSYSNASNSSFASSLICEGDESLCNANNKWESDRFHCIQQLSGENPETSDSQTVLSMEHLHQNGWMSSNTMNSKLWNELSLSLATTEPVLSGGTDFLDQYSQLTFSGATQPCLNSTELASNLNSGSSRDLSLSYGFGNSVRLSRAIAGSRYLSVIQDVLSQIASYPLESSDQLSHSTTAIGFVPFSSSSSLDEATIEYGSDVTGRYSSQMEPEWQNLSVDAKKSHLLTLLQLIDERYTQCLDEIHTVTSAFHAATDLDPRLHTRYTLQTITSVYKNLREKITSCIFAIGKHSNAACTKEKEKSFEATFLQKQWALQQLKRKDNQLWRPQRGLPEKSVSVLRAWMFQNFLHPYPKDTEKHLLAVKSGLTRNQVSNWFINARVRLWKPMIEEMYAEMSRRKSSQNEEGIERIHCPR* 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18276116 18277825 - Chy3G066200.1 Chy03g01640 223801

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01640 486 Gene3D - 401 480 - -
Chy03g01640 486 PANTHER HOMEOBOX PROTEIN ATH1 10 481 - -
Chy03g01640 486 SUPERFAMILY Homeodomain-like 399 467 IPR009057 -
Chy03g01640 486 SMART prehox3 212 355 IPR006563 -
Chy03g01640 486 Pfam Associated with HOX 218 354 IPR006563 -
Chy03g01640 486 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 10 481 - -
Chy03g01640 486 SMART HOX_1 398 462 IPR001356 GO:0003677
Chy03g01640 486 Pfam Homeobox KN domain 415 454 IPR008422 GO:0003677|GO:0006355
Chy03g01640 486 ProSiteProfiles 'Homeobox' domain profile. 395 458 IPR001356 GO:0003677
Chy03g01640 486 CDD homeodomain 398 459 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01640 - - - csv:101204223 951.814
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01640 Chy-Chr3:18276116 Chy05g00203 Chy-Chr5:1699963 2.51E-42 dispersed
Chy03g01640 Chy-Chr3:18276116 Chy04g01857 Chy-Chr4:24758171 1.28E-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g68 . . . . Bpe02g01536 . . . Cmo05g00107 Cmo12g00574 . Cma05g00100 . Car12g00582 . Cpe07g00555 . Bhi04g00500 . . . Hepe08g1385 . Lcy13g2179 . . . . . . . . . Cone17ag0921 Cone20ag0264 . . . . Blo17g00292 . Bda01g01326 Bda13g01607 Bpe14g00258 . Bma01g00927 . . . . . Cma12g00634 . Car05g00086 Cpe11g00080 . . . . . . . . . . . . . . . Lsi08g01577 Csa02g01843 Chy03g01640 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003901 2 8 1 1 2 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17769 PF07526 POX 1.10E-21 No_clan Chy TF