Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01664 ATGTGCAAGACTCTTTCTGCACTATATTGTAAAGTATTATCAATTTTCCCTTCATTGGAAGCTGCACGACCTCGGAGCAAGTCTGGTATCCAGGCATTATGTTCTTTGCATGTAGCACTTGAAAAGGCCAAGAATACTCTCCAACATTGTACAGAGAGCAGCAAACTTTACTTGGATAGCTGTCTTTATGGTTGTTTAGAGCCACTAATGCCATACAAAGCATTAACTTTCAACCCTACTGATGATGAAGTTGTCATGGAGCTTTTCTGTTACTACTTTACGATGGTTTTCAGCACCGTAAAATTTCTGGCTATAACCGGGGACTCTGTCCTGTTAAAGTTTGAGAAGGTAAAAAGTGCTCTACAAGATAGCCTTAAACGTGTTGAAGATATTGTTCCACAGTCAATTGGCTATCAGGTTCAGGAGATTATGAAGGAGCTGGGGAGCACTCAATTTTTCCTCGATCCTTTAGAGAAGCAAGTTGGTGATGACATTATTTTATTGCTCCAACAGGGACGAACATTTAACAACGCCGTTGACAACAATGAGCTTGAGGCTTTTCACCAAGCTGCTACTAAACTTGGAATAAACTCCTCAAGAGCAGCTCTTGCAGAAAGAAGAGCACTAAAGAAACTAATTGACCGGTCTCGCACTGAAGACGACAAGAGGAAGGAATCAATTGTAGCTTATCTTTTGCATCTCATGAGGAAGTATTCCAAGTTATTTAGAACCGAAGTATCGGATGACAATGATTCACAGGGTTCTGGACCTTGTTCACCCACTGTTCAGGGCTCTCTTGATGACAGTGGACCTGGTGGAAATGGTCAAGCCTTTGAAAGGCAGCTAACAAAGATTGGTTCTTTTACTTTGAAGCCAAAAATTCGCAAATTGGAGCAGATTCCCCTTCCACCTGATGAGTTGAGGTGTCCTATATCATTGCAACTTATGTATGATCCGGTCATAATTGCTTCTGGGCAAACATATGAAAGGATTTGCATTGAGAAGTGGTTAAATGATGGCCATAACACCTGCCCGAAAACTCAACAGAAACTCTCTCATCTTTCATTGACACCGAATTTCTGTGTCAAGGGCCTGATTGCAAACTGGTGTGAGCAATATGGAGTGCCTGTTCCTGATGGACCTCCAGATAGTCTTGACCTCAATTACTGGAGACTCGCATTATCTGAAGAGTCTCTAGATTTGTCACCTGTGGACTCTGTTGGTTCGTGTAAGGTGAAAGATGTTAAAGTTGTTCCAGTAGATGAAAATAGTGTAACTGAGGAGATCAAAGGAAATGAGGTGGGTGACAACTCTGCTGAAGACGAGGAGTCCAACGTGAATATGCTCGCTAGGCATGAACAGTATTTGAAAGTCTTAAACGACGAAGTTGACATGAAGAAAAAGTCGGCGATGGTGGAGCAAATTAGGCTGTTGCTCAAGGATGATGAAGAGGCGAGGATATTTATGGGAGCTAATGGGTTTGTCCAGGGAATTCTACGGTACTTAGAGATAGCTGTGAAAGAACAAAATACCAAGGCTCAAGAAAGTGGAGCAATGGCTCTTTTCAATCTTGCTGTCAACAACGATAGGAACAAGGAAATAATGCTGGCGGAAGGGGTGATTTCACTGTTAGAGGATATGATTATGAACCCAAATTCGCATGGATATGCAACGGCCCTCTATCTCAACGTCTCCTGTCTGGAAGAAGCAAAATCTATTATCGGCTCAAGTTGTGCGGTCCCTTTCTTAACTCAACTCCTCCACGCCAATACCGAAACACTATGCAAGCTCGATGCACTTCACACACTTTACAATCTCTCAACTGTACCCTCCAATATTCCCAACCTGATATCTTCTGGAATCATCAAGGGACTTCAAGCCCTCCTTGCAGCCCGTCTCGATCGAACATGGACCGAAAAGTGCATAGCCATCTTGATAAATTTGGCTTCAACTGAATCAGGTAGAGATCAAATGTCATCCACTCCAGAACTCATCAGTGGGTTGGCTGCAATACTAGACAATGGCGAACCCATCGAGCAGGAACAGGCAGTGGCTTGTCTCTTGATTTTGTGCAATGGGAACGAGAGGTGCAGTGAGATGGTCCTTCAGGAAGGCGTAATTCCCGGGTTGGTATCGATGTCTGTGAACGGGACAGCGAGAGGTAAGGAAAAGGCTCAAAAGCTTCTGATGTTGTTTAGAGAGCAACGGCAACGGGAATCACCACCAGCACCACCGGCAGCACCGACACTAATACCAACACCGATACCGACGGACCAATCGGAGAGCGGCGGGACATCTATGGGTGTGGCAGAATCAAAGCCACTGTGCAAGTCAATCTCAAGAAGAAAACCAGGAAAAGCTTTGAGCTTTTTGTGGAAAAGCAAAAGCTATTCCGTGTACCAATGCTGA 2409 44.04 MCKTLSALYCKVLSIFPSLEAARPRSKSGIQALCSLHVALEKAKNTLQHCTESSKLYLDSCLYGCLEPLMPYKALTFNPTDDEVVMELFCYYFTMVFSTVKFLAITGDSVLLKFEKVKSALQDSLKRVEDIVPQSIGYQVQEIMKELGSTQFFLDPLEKQVGDDIILLLQQGRTFNNAVDNNELEAFHQAATKLGINSSRAALAERRALKKLIDRSRTEDDKRKESIVAYLLHLMRKYSKLFRTEVSDDNDSQGSGPCSPTVQGSLDDSGPGGNGQAFERQLTKIGSFTLKPKIRKLEQIPLPPDELRCPISLQLMYDPVIIASGQTYERICIEKWLNDGHNTCPKTQQKLSHLSLTPNFCVKGLIANWCEQYGVPVPDGPPDSLDLNYWRLALSEESLDLSPVDSVGSCKVKDVKVVPVDENSVTEEIKGNEVGDNSAEDEESNVNMLARHEQYLKVLNDEVDMKKKSAMVEQIRLLLKDDEEARIFMGANGFVQGILRYLEIAVKEQNTKAQESGAMALFNLAVNNDRNKEIMLAEGVISLLEDMIMNPNSHGYATALYLNVSCLEEAKSIIGSSCAVPFLTQLLHANTETLCKLDALHTLYNLSTVPSNIPNLISSGIIKGLQALLAARLDRTWTEKCIAILINLASTESGRDQMSSTPELISGLAAILDNGEPIEQEQAVACLLILCNGNERCSEMVLQEGVIPGLVSMSVNGTARGKEKAQKLLMLFREQRQRESPPAPPAAPTLIPTPIPTDQSESGGTSMGVAESKPLCKSISRRKPGKALSFLWKSKSYSVYQC* 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18421852 18425065 + Chy3G066440.1 Chy03g01664 223825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01664 802 ProSiteProfiles U-box domain profile. 302 376 IPR003613 GO:0004842|GO:0016567
Chy03g01664 802 MobiDBLite consensus disorder prediction 753 767 - -
Chy03g01664 802 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 102 749 - -
Chy03g01664 802 SUPERFAMILY RING/U-box 303 379 - -
Chy03g01664 802 MobiDBLite consensus disorder prediction 246 277 - -
Chy03g01664 802 CDD RING-Ubox_PUB 307 349 IPR045210 -
Chy03g01664 802 Pfam U-box domain 304 372 IPR003613 GO:0004842|GO:0016567
Chy03g01664 802 MobiDBLite consensus disorder prediction 248 270 - -
Chy03g01664 802 SUPERFAMILY ARM repeat 454 722 IPR016024 -
Chy03g01664 802 MobiDBLite consensus disorder prediction 735 777 - -
Chy03g01664 802 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 58 - -
Chy03g01664 802 Gene3D - 423 740 IPR011989 -
Chy03g01664 802 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 375 IPR013083 -
Chy03g01664 802 SMART Ubox_2 306 369 IPR003613 GO:0004842|GO:0016567
Chy03g01664 802 PANTHER U BOX DOMAIN-CONTAINING 1 58 - -
Chy03g01664 802 PANTHER U BOX DOMAIN-CONTAINING 102 749 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01664 Chy-Chr3:18421852 Chy12g00185 Chy-Chr12:2245357 2.44E-52 dispersed
Chy07g00339 Chy-Chr7:2764506 Chy03g01664 Chy-Chr3:18421852 3.09E-28 dispersed
Chy12g00104 Chy-Chr12:1128669 Chy03g01664 Chy-Chr3:18421852 1.45E-13 dispersed
Chy07g01240 Chy-Chr7:17152391 Chy03g01664 Chy-Chr3:18421852 3.07E-81 transposed
Chy10g00794 Chy-Chr10:13997370 Chy03g01664 Chy-Chr3:18421852 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01664 - - csv:101220593 1416.75