Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01676 ATGTACCTGTCTGATAAGCCTCGCCCAATTGATATTTACAAGGAAGAAGGTAGCAGAGATATGATGATCGAGGTAGCCTCCAATGGCGACCACCATATTCAACCTCATCAGCCACAGCCACAGCCACAACAGACTCATCAGCAGCACCAAATGATGCTTGGTGATAGCAGTGGTGAGGATCATGAAGTCAAGGCTCCTAAGAAGCGAGCGGAGACTTGGGTTCAAGACGAGACTCGAAGCTTAATTGCTCTACGTAGGGAGATGGATGGTTTGTTTAATACCTCGAAATCCAACAAGCATTTGTGGGAGCAGATATCGGCTAAGATGAGGGAAAGGGGATTTGATCGCTCCCCGACTATGTGTACTGATAAGTGGAGGAACTTGCTTAAGGAGTTCAAGAAAGCAAAGCACCATGACAGGGGAAGTGGCTCTGCTAAGATGTCGTGTTACAAAGAGATTGAAGAAATATTGAAGGAAAGAAGCAAGAGTACGCAGTACAAAAGCCCCACGCCACCCAAGATTGATTCGTATATGCAATTCTCAGATAAAGGAATAGAGGATAATGGTCTATCGTTCGGACCTGTTGAAGGTGGCAGGCCTTCACTCAATCTTGAAAGACAACTAGATCACGATGGACATCCCCTTGCCATCACAGCAGCCGATGCAGTTGCTGCAACAGGCATTCCACCTTGGAATTGGAGAGAGGCACCTGGAAATGGTGGGGAGAGTCAGGCATTTGGAGGGAGAGTAATATCAGTGAAGTGGGGGGATTACACCAGAAGAATTGGTGTTGACGGCACCTCAGAGGCAATCAAGGAGGCAATCAAGTCTGCATTCGGGTTGAGAACTAAACGTGCATTTTGGTTAGAGGATGAGGACCAGGTTGTCAGAAGTCTGGACAGGGACATGCCTTTAGGAAACTACACTCTTCACCTTGACGAAGGTACCACTTTCTGTGTTTGTATTGACGGTTATGATTCTTGTAAAAATTGTAGCACTAAGCTGACACATGTTGGGCAAAGTACATTATGTAAGACCAGTGAACTTCTGATTTCAGGTGTGGCTGTTAAAATCTGCCTCTATGATGAATCTAACCACTTACCGGTACATTCTGAAGACAAAGTTTTTTACATTGAAGAAGATTATCGAGATTTTTTAGCTCGTCGAGGCTGGACAAGCCTACGGGAGTTTGATGGGTATAGAAACATTGATAATATGGATGATCTTCGTTCTGGTGCATTATACCGTAGAAACATCGATAATATGGATGATCTCCGTCCTGGTGCAATATACCGTGGTGTAAGCTGA 1308 45.03 MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPQPQPQQTHQQHQMMLGDSSGEDHEVKAPKKRAETWVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNLLKEFKKAKHHDRGSGSAKMSCYKEIEEILKERSKSTQYKSPTPPKIDSYMQFSDKGIEDNGLSFGPVEGGRPSLNLERQLDHDGHPLAITAADAVAATGIPPWNWREAPGNGGESQAFGGRVISVKWGDYTRRIGVDGTSEAIKEAIKSAFGLRTKRAFWLEDEDQVVRSLDRDMPLGNYTLHLDEGTTFCVCIDGYDSCKNCSTKLTHVGQSTLCKTSELLISGVAVKICLYDESNHLPVHSEDKVFYIEEDYRDFLARRGWTSLREFDGYRNIDNMDDLRSGALYRRNIDNMDDLRPGAIYRGVS* 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18491733 18494981 - Chy3G066560.1 Chy03g01676 223837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01676 435 MobiDBLite consensus disorder prediction 32 54 - -
Chy03g01676 435 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 5 331 - -
Chy03g01676 435 Gene3D - 73 135 - -
Chy03g01676 435 MobiDBLite consensus disorder prediction 55 71 - -
Chy03g01676 435 CDD GT1 71 136 - -
Chy03g01676 435 Pfam Myb/SANT-like DNA-binding domain 72 156 IPR044822 -
Chy03g01676 435 ProSiteProfiles Myb-like domain profile. 65 129 IPR001005 -
Chy03g01676 435 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 348 416 - -
Chy03g01676 435 PANTHER - 5 331 - -
Chy03g01676 435 PANTHER - 348 416 - -
Chy03g01676 435 SMART sant 69 131 IPR001005 -
Chy03g01676 435 MobiDBLite consensus disorder prediction 30 71 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01676 Chy-Chr3:18491733 Chy12g00600 Chy-Chr12:8546380 1.47E-09 dispersed
Chy03g01676 Chy-Chr3:18491733 Chy04g02260 Chy-Chr4:27260336 3.98E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17772 PF13837 Myb_DNA-bind_4 2.40E-20 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01676 - - csv:101222888 752.281