Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01687 ATGGAAAATGGCTTCTCTTCTCCTCGAAGCGATGTGTTTCCTATCGGTCTTCGTGTTCTTGTTGTTGATGATGATCCAACATGGCTGAAAATCTTGGAAAAGATGCTCAAGAAGTGCTCTTACGAAGTGACTACATGTTGTTTGGCAAGGGAGGCTCTGAGCTTGCTTAGGGAGAGAAAAGATGGATATGATATCGTAATCAGCGACGTCAACATGCCCGATATGGATGGTTTTAAACTCCTTGAGCATGTGGGATTGGAAATGGACCTGCCAGTTATCATGATGTCGGTTGACGGAGAAACAAGTAGAGTGATGAAAGGGGTTCAACACGGTGCTTGTGATTATCTTCTAAAGCCGATACGAATGAAAGAACTTAGGAATATATGGCAACACGTATTGCGAAAGAAGATACAAGAGGGAAGAGATATTGAAGGGCATGATGTTATTGAAGGGATCCACATACTAAGAAATGTGGCAGATAGATACGATGATAGCCAGTTCCTCAGGGGAGAGGAACTGTTTTCAGTGAGGAAACGAAAAGATATTGATAAGCATGAGGACAAAGACTTTTGTGACACTTCTTCCACAAAGAAAGCAAGGGTTGTTTGGTCAGTTGATTTGCACCAGAAATTTGTAAAAGCAGTAAACCAGATAGGCTTTGACAAAGTTGGTCCTAAAAAGATACTTGATCTCATGAATGTCCCTTGGCTAACTAGGGAAAATGTAGCTAGCCACTTGCAGAAATACCGCCTCTATTTGAGTCGGCTGCAGAAAGAAAATGATCCAAAAGCTTGCTTTGTTGTTGGGATGAAACCTAAAGATTCGTGTTCAAAGGATGGAGATGGAAACTTCGGCCTTCGTAGTTCATTAGCCGTGCCACAAAATGATGTCACAAACAGCAGCTTTAGCTTTTCAGGTGATAACTTCCTGCTACAGAATGTAGATTCCATAGGCTGTGAAGTTGATAGGAAAAGGATTGTTCAAGAGCATACATCAGAGCCAAAAAGAGCTGCTAGTAGGAGTGTTCCTGAACCAATAAAGACGCGGTGTACGCAGATGAAATTCAACAACACTATTCACACTGTTGAACCTGAAGGGAAGTTTGCAGCATTTGATCCAAGCAACCGAAGCTGTTACCCTTGGGTTGAAGCTCCCGAAATCAAGTTCAAACAAGAAAGCAAGCCAATCGTGCATTTAGAAGGAGTCAATCAATTCCCTCCCACGGTTCCGCCACGCCAAGTTCAAATGGACCAACTACAATCGATTTCGTCCATTAGTTCTGGAAGGTCAGCAACAGAGAAAGATATAGCAAGCTCCATTGAAAGTAAGCCTCCATATTCTGAAAACTGTAGCCAACAGAGGGTCCATTTAAATCTACCAAAAACACCAACTGATTCATTTGCTGGGAAGGCAAAGAGTTTCAACGAGATGAATGATCATTTTGATCCCAATTCAACTACAAGAACTCCATTGGGCAAAAACCAGAATTTCAATCCTAGCTGCATTTCAACTGATTTAGGAAGTGGGTTACCTTTTGCAACCATTGATGAAGACTTGCAGGGCTTTTTGCATCAAGATGGATGCTACCCAAAAAACCTTGAACATCAGATTATAGACTTTCCAGATTATGGTGATCCAGGCATCTTCACTGAAGTTCCTACTCACCTTTACGATGCAATGAGGTTTGGCTACGATTATTCCTATGACCCAACTGAGTATCCGGTGATAGATGAAGGCCTATTTATTGCATGA 1752 41.89 MENGFSSPRSDVFPIGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEGHDVIEGIHILRNVADRYDDSQFLRGEELFSVRKRKDIDKHEDKDFCDTSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKPKDSCSKDGDGNFGLRSSLAVPQNDVTNSSFSFSGDNFLLQNVDSIGCEVDRKRIVQEHTSEPKRAASRSVPEPIKTRCTQMKFNNTIHTVEPEGKFAAFDPSNRSCYPWVEAPEIKFKQESKPIVHLEGVNQFPPTVPPRQVQMDQLQSISSISSGRSATEKDIASSIESKPPYSENCSQQRVHLNLPKTPTDSFAGKAKSFNEMNDHFDPNSTTRTPLGKNQNFNPSCISTDLGSGLPFATIDEDLQGFLHQDGCYPKNLEHQIIDFPDYGDPGIFTEVPTHLYDAMRFGYDYSYDPTEYPVIDEGLFIA* 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18548026 18550841 - Chy3G066670.1 Chy03g01687 223848

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01687 583 CDD REC_typeB_ARR-like 19 133 - -
Chy03g01687 583 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 487 - -
Chy03g01687 583 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 487 IPR045279 GO:0009736
Chy03g01687 583 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Chy03g01687 583 Gene3D - 194 257 - -
Chy03g01687 583 SUPERFAMILY CheY-like 16 141 IPR011006 -
Chy03g01687 583 MobiDBLite consensus disorder prediction 423 448 - -
Chy03g01687 583 SMART REC_2 17 129 IPR001789 GO:0000160
Chy03g01687 583 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
Chy03g01687 583 Gene3D - 17 171 - -
Chy03g01687 583 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Chy03g01687 583 PIRSF RR_ARR_type-B 1 526 IPR017053 GO:0003677|GO:0003700|GO:0009736
Chy03g01687 583 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Chy03g01687 583 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01687 - - K14491 csv:101204370 1148.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01730 Chy-Chr1:23063959 Chy03g01687 Chy-Chr3:18548026 1.32E-10 dispersed
Chy03g01687 Chy-Chr3:18548026 Chy07g00343 Chy-Chr7:2803571 1.83E-87 dispersed
Chy12g01526 Chy-Chr12:19020856 Chy03g01687 Chy-Chr3:18548026 5.77E-20 dispersed
Chy03g01687 Chy-Chr3:18548026 Chy11g01546 Chy-Chr11:22011151 3.07E-96 transposed
Chy03g01687 Chy-Chr3:18548026 Chy06g00735 Chy-Chr6:5017383 4.70E-96 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy07g00343 . 52 346 Response Regulator Gene Family AT3G16857 53.3 4.4e-60 229.6
Chy03g01687 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.1e-54 210.7
Chy05g01262 . 59 316 Response Regulator Gene Family AT3G16857 52.2 1.2e-52 204.9
Chy02g02099 . 18 383 Response Regulator Gene Family AT4G31920 54.5 4.3e-91 332.4
Chy07g00343 . 1 413 Response Regulator Gene Family AT4G31920 52.5 1.5e-88 323.9
Chy05g01262 . 13 340 Response Regulator Gene Family AT4G31920 54.8 4.2e-78 289.3
Chy11g01546 CCT,ECH 29 282 Response Regulator Gene Family AT4G31920 55.1 2.9e-71 266.5
Chy06g00735 CCT,ECH 16 270 Response Regulator Gene Family AT4G31920 53.4 1.6e-69 260.8
Chy03g01687 . 11 259 Response Regulator Gene Family AT4G31920 50.4 5.4e-62 235.7
Chy06g00735 CCT,ECH 99 261 Response Regulator Gene Family AT1G67710 53.8 2.4e-39 160.2
Chy02g02099 . 16 390 Response Regulator Gene Family AT2G25180 55.9 1.5e-102 370.5
Chy05g01262 . 17 359 Response Regulator Gene Family AT2G25180 54.4 1.8e-82 303.9
Chy06g00735 CCT,ECH 18 290 Response Regulator Gene Family AT2G25180 55.0 4.5e-78 289.3
Chy03g01687 . 11 256 Response Regulator Gene Family AT2G25180 55.6 1.1e-68 258.1
Chy11g01546 CCT,ECH 90 323 Response Regulator Gene Family AT2G01760 50.6 3.5e-53 205.7
Chy02g02099 . 79 303 Response Regulator Gene Family AT2G01760 53.1 8.0e-50 194.5
Chy03g01687 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.4e-48 189.1
Chy03g01687 . 9 258 Response Regulator Gene Family AT5G58080 50.6 8.2e-62 235.3
Chy11g01546 CCT,ECH 27 253 Response Regulator Gene Family AT4G16110 66.0 2.6e-79 293.5
Chy06g00735 CCT,ECH 12 241 Response Regulator Gene Family AT4G16110 65.3 1.7e-78 290.8
Chy07g00343 . 12 233 Response Regulator Gene Family AT4G16110 71.0 3.2e-61 233.4
Chy03g01687 . 10 235 Response Regulator Gene Family AT4G16110 54.5 1.2e-58 224.9
Chy02g02099 . 17 249 Response Regulator Gene Family AT4G16110 53.4 1.1e-56 218.4
Chy05g01262 . 12 266 Response Regulator Gene Family AT4G16110 52.0 2.3e-51 200.7
Chy02g02547 . 30 162 Response Regulator Gene Family AT3G48100 76.7 2.5e-51 198.7
Chy10g00941 . 29 162 Response Regulator Gene Family AT3G48100 72.4 5.5e-51 197.6
Chy10g01363 . 12 168 Response Regulator Gene Family AT3G48100 55.4 2.8e-39 158.7
Chy08g00289 . 17 164 Response Regulator Gene Family AT3G48100 54.7 5.9e-37 151.0
Chy10g00941 . 1 175 Response Regulator Gene Family AT1G59940 65.4 5.8e-56 214.9
Chy02g02547 . 9 158 Response Regulator Gene Family AT1G59940 62.3 8.4e-47 184.5
Chy10g01363 . 7 156 Response Regulator Gene Family AT1G59940 58.7 3.1e-41 166.0
Chy10g00941 . 18 185 Response Regulator Gene Family AT1G10470 67.9 4.9e-55 211.5
Chy02g02547 . 29 167 Response Regulator Gene Family AT1G10470 66.2 4.6e-45 178.3
Chy10g01363 . 7 156 Response Regulator Gene Family AT1G10470 56.7 2.9e-39 159.1
Chy02g02547 . 30 162 Response Regulator Gene Family AT3G48100 76.7 2.5e-51 198.7
Chy10g00941 . 29 162 Response Regulator Gene Family AT3G48100 72.4 5.5e-51 197.6
Chy10g01363 . 12 168 Response Regulator Gene Family AT3G48100 55.4 2.8e-39 158.7
Chy08g00289 . 17 164 Response Regulator Gene Family AT3G48100 54.7 5.9e-37 151.0
Chy02g02547 . 23 163 Response Regulator Gene Family AT5G62920 73.8 9.5e-51 196.8
Chy10g00941 . 25 175 Response Regulator Gene Family AT5G62920 68.2 3.0e-49 191.8
Chy10g01363 . 2 171 Response Regulator Gene Family AT5G62920 52.0 8.3e-39 157.1
Chy08g00289 . 17 164 Response Regulator Gene Family AT5G62920 54.7 7.8e-37 150.6
Chy02g02547 . 29 162 Response Regulator Gene Family AT1G19050 74.6 2.6e-49 192.2
Chy10g00941 . 28 185 Response Regulator Gene Family AT1G19050 60.4 1.1e-44 176.8
Chy10g01363 . 9 153 Response Regulator Gene Family AT1G19050 55.2 1.0e-37 153.7
Chy08g00289 . 8 270 Response Regulator Gene Family AT2G41310 51.0 1.4e-56 216.5
Chy10g01363 . 3 149 Response Regulator Gene Family AT2G41310 66.0 3.1e-48 188.7
Chy03g00788 . 20 160 Response Regulator Gene Family AT2G41310 62.7 1.4e-43 173.3
Chy10g00941 . 25 158 Response Regulator Gene Family AT2G41310 58.9 2.8e-41 165.6
Chy02g02547 . 28 159 Response Regulator Gene Family AT2G41310 61.9 8.2e-41 164.1
Chy08g00289 . 8 270 Response Regulator Gene Family AT3G57040 51.5 8.2e-60 227.3
Chy10g01363 . 8 149 Response Regulator Gene Family AT3G57040 70.4 4.5e-50 194.9
Chy03g00788 . 20 194 Response Regulator Gene Family AT3G57040 53.6 3.4e-45 178.7
Chy10g00941 . 25 158 Response Regulator Gene Family AT3G57040 59.4 3.1e-43 172.2
Chy02g02547 . 25 159 Response Regulator Gene Family AT3G57040 61.8 1.0e-41 167.2
Chy02g02547 . 24 182 Response Regulator Gene Family AT1G74890 69.3 4.3e-52 201.4
Chy10g00941 . 25 187 Response Regulator Gene Family AT1G74890 61.8 2.4e-47 185.7
Chy10g01363 . 2 159 Response Regulator Gene Family AT1G74890 57.6 1.5e-41 166.4
Chy10g00941 . 26 159 Response Regulator Gene Family AT2G40670 55.5 1.5e-39 159.5
Chy02g02547 . 29 160 Response Regulator Gene Family AT2G40670 57.8 5.3e-37 151.0
Chy10g00941 . 26 159 Response Regulator Gene Family AT3G56380 54.8 2.8e-40 161.8
Chy02g02547 . 24 160 Response Regulator Gene Family AT3G56380 58.0 1.4e-39 159.5
Chy10g01363 . 2 148 Response Regulator Gene Family AT3G56380 54.7 1.7e-37 152.5
Chy07g00343 . 52 346 Response Regulator Gene Family AT3G16857 53.3 4.4e-60 229.6
Chy03g01687 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.1e-54 210.7
Chy05g01262 . 59 316 Response Regulator Gene Family AT3G16857 52.2 1.2e-52 204.9
Chy11g01546 CCT,ECH 27 253 Response Regulator Gene Family AT4G16110 66.0 2.6e-79 293.5
Chy06g00735 CCT,ECH 12 241 Response Regulator Gene Family AT4G16110 65.3 1.7e-78 290.8
Chy07g00343 . 12 233 Response Regulator Gene Family AT4G16110 71.0 3.2e-61 233.4
Chy03g01687 . 10 235 Response Regulator Gene Family AT4G16110 54.5 1.2e-58 224.9
Chy02g02099 . 17 249 Response Regulator Gene Family AT4G16110 53.4 1.1e-56 218.4
Chy05g01262 . 12 266 Response Regulator Gene Family AT4G16110 52.0 2.3e-51 200.7
Chy02g02099 . 18 383 Response Regulator Gene Family AT4G31920 54.5 4.3e-91 332.4
Chy07g00343 . 1 413 Response Regulator Gene Family AT4G31920 52.5 1.5e-88 323.9
Chy05g01262 . 13 340 Response Regulator Gene Family AT4G31920 54.8 4.2e-78 289.3
Chy11g01546 CCT,ECH 29 282 Response Regulator Gene Family AT4G31920 55.1 2.9e-71 266.5
Chy06g00735 CCT,ECH 16 270 Response Regulator Gene Family AT4G31920 53.4 1.6e-69 260.8
Chy03g01687 . 11 259 Response Regulator Gene Family AT4G31920 50.4 5.4e-62 235.7
Chy06g00735 CCT,ECH 99 261 Response Regulator Gene Family AT1G67710 53.8 2.4e-39 160.2
Chy02g02099 . 16 390 Response Regulator Gene Family AT2G25180 55.9 1.5e-102 370.5
Chy05g01262 . 17 359 Response Regulator Gene Family AT2G25180 54.4 1.8e-82 303.9
Chy06g00735 CCT,ECH 18 290 Response Regulator Gene Family AT2G25180 55.0 4.5e-78 289.3
Chy03g01687 . 11 256 Response Regulator Gene Family AT2G25180 55.6 1.1e-68 258.1
Chy11g01546 CCT,ECH 90 323 Response Regulator Gene Family AT2G01760 50.6 3.5e-53 205.7
Chy02g02099 . 79 303 Response Regulator Gene Family AT2G01760 53.1 8.0e-50 194.5
Chy03g01687 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.4e-48 189.1
Chy03g01687 . 9 258 Response Regulator Gene Family AT5G58080 50.6 8.2e-62 235.3
Chy12g01526 . 35 584 Response Regulator Gene Family AT5G61380 50.5 4.1e-143 505.4
Chy08g00806 . 38 206 Response Regulator Gene Family AT5G60100 68.6 2.1e-55 213.4
Chy09g01472 . 50 187 Response Regulator Gene Family AT5G60100 61.6 2.0e-45 180.3
Chy08g00806 . 67 206 Response Regulator Gene Family AT5G24470 55.7 3.8e-39 159.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007972 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 3 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17773 PF00072 Response_reg 1.20E-24 CL0304 Chy TF