Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01687 ATGGAAAATGGCTTCTCTTCTCCTCGAAGCGATGTGTTTCCTATCGGTCTTCGTGTTCTTGTTGTTGATGATGATCCAACATGGCTGAAAATCTTGGAAAAGATGCTCAAGAAGTGCTCTTACGAAGTGACTACATGTTGTTTGGCAAGGGAGGCTCTGAGCTTGCTTAGGGAGAGAAAAGATGGATATGATATCGTAATCAGCGACGTCAACATGCCCGATATGGATGGTTTTAAACTCCTTGAGCATGTGGGATTGGAAATGGACCTGCCAGTTATCATGATGTCGGTTGACGGAGAAACAAGTAGAGTGATGAAAGGGGTTCAACACGGTGCTTGTGATTATCTTCTAAAGCCGATACGAATGAAAGAACTTAGGAATATATGGCAACACGTATTGCGAAAGAAGATACAAGAGGGAAGAGATATTGAAGGGCATGATGTTATTGAAGGGATCCACATACTAAGAAATGTGGCAGATAGATACGATGATAGCCAGTTCCTCAGGGGAGAGGAACTGTTTTCAGTGAGGAAACGAAAAGATATTGATAAGCATGAGGACAAAGACTTTTGTGACACTTCTTCCACAAAGAAAGCAAGGGTTGTTTGGTCAGTTGATTTGCACCAGAAATTTGTAAAAGCAGTAAACCAGATAGGCTTTGACAAAGTTGGTCCTAAAAAGATACTTGATCTCATGAATGTCCCTTGGCTAACTAGGGAAAATGTAGCTAGCCACTTGCAGAAATACCGCCTCTATTTGAGTCGGCTGCAGAAAGAAAATGATCCAAAAGCTTGCTTTGTTGTTGGGATGAAACCTAAAGATTCGTGTTCAAAGGATGGAGATGGAAACTTCGGCCTTCGTAGTTCATTAGCCGTGCCACAAAATGATGTCACAAACAGCAGCTTTAGCTTTTCAGGTGATAACTTCCTGCTACAGAATGTAGATTCCATAGGCTGTGAAGTTGATAGGAAAAGGATTGTTCAAGAGCATACATCAGAGCCAAAAAGAGCTGCTAGTAGGAGTGTTCCTGAACCAATAAAGACGCGGTGTACGCAGATGAAATTCAACAACACTATTCACACTGTTGAACCTGAAGGGAAGTTTGCAGCATTTGATCCAAGCAACCGAAGCTGTTACCCTTGGGTTGAAGCTCCCGAAATCAAGTTCAAACAAGAAAGCAAGCCAATCGTGCATTTAGAAGGAGTCAATCAATTCCCTCCCACGGTTCCGCCACGCCAAGTTCAAATGGACCAACTACAATCGATTTCGTCCATTAGTTCTGGAAGGTCAGCAACAGAGAAAGATATAGCAAGCTCCATTGAAAGTAAGCCTCCATATTCTGAAAACTGTAGCCAACAGAGGGTCCATTTAAATCTACCAAAAACACCAACTGATTCATTTGCTGGGAAGGCAAAGAGTTTCAACGAGATGAATGATCATTTTGATCCCAATTCAACTACAAGAACTCCATTGGGCAAAAACCAGAATTTCAATCCTAGCTGCATTTCAACTGATTTAGGAAGTGGGTTACCTTTTGCAACCATTGATGAAGACTTGCAGGGCTTTTTGCATCAAGATGGATGCTACCCAAAAAACCTTGAACATCAGATTATAGACTTTCCAGATTATGGTGATCCAGGCATCTTCACTGAAGTTCCTACTCACCTTTACGATGCAATGAGGTTTGGCTACGATTATTCCTATGACCCAACTGAGTATCCGGTGATAGATGAAGGCCTATTTATTGCATGA 1752 41.89 MENGFSSPRSDVFPIGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEGHDVIEGIHILRNVADRYDDSQFLRGEELFSVRKRKDIDKHEDKDFCDTSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKPKDSCSKDGDGNFGLRSSLAVPQNDVTNSSFSFSGDNFLLQNVDSIGCEVDRKRIVQEHTSEPKRAASRSVPEPIKTRCTQMKFNNTIHTVEPEGKFAAFDPSNRSCYPWVEAPEIKFKQESKPIVHLEGVNQFPPTVPPRQVQMDQLQSISSISSGRSATEKDIASSIESKPPYSENCSQQRVHLNLPKTPTDSFAGKAKSFNEMNDHFDPNSTTRTPLGKNQNFNPSCISTDLGSGLPFATIDEDLQGFLHQDGCYPKNLEHQIIDFPDYGDPGIFTEVPTHLYDAMRFGYDYSYDPTEYPVIDEGLFIA* 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18548026 18550841 - Chy3G066670.1 Chy03g01687 223848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01687 583 CDD REC_typeB_ARR-like 19 133 - -
Chy03g01687 583 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 487 - -
Chy03g01687 583 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 487 IPR045279 GO:0009736
Chy03g01687 583 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Chy03g01687 583 Gene3D - 194 257 - -
Chy03g01687 583 SUPERFAMILY CheY-like 16 141 IPR011006 -
Chy03g01687 583 MobiDBLite consensus disorder prediction 423 448 - -
Chy03g01687 583 SMART REC_2 17 129 IPR001789 GO:0000160
Chy03g01687 583 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
Chy03g01687 583 Gene3D - 17 171 - -
Chy03g01687 583 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Chy03g01687 583 PIRSF RR_ARR_type-B 1 526 IPR017053 GO:0003677|GO:0003700|GO:0009736
Chy03g01687 583 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Chy03g01687 583 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01730 Chy-Chr1:23063959 Chy03g01687 Chy-Chr3:18548026 1.32E-10 dispersed
Chy03g01687 Chy-Chr3:18548026 Chy07g00343 Chy-Chr7:2803571 1.83E-87 dispersed
Chy12g01526 Chy-Chr12:19020856 Chy03g01687 Chy-Chr3:18548026 5.77E-20 dispersed
Chy03g01687 Chy-Chr3:18548026 Chy11g01546 Chy-Chr11:22011151 3.07E-96 transposed
Chy03g01687 Chy-Chr3:18548026 Chy06g00735 Chy-Chr6:5017383 4.70E-96 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17773 PF00072 Response_reg 1.20E-24 CL0304 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01687 - K14491 csv:101204370 1148.65