Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01694 ATGGAAAATTCCAATTCTGTTGTGATTATAATGAGTATAAAGTTATTAGTATTGAGTATTATTATGCTCCAAATGAGCTCCATTTCATCGTCTTCTCCAGTCCCCGATCCTGATTTAGTCGCCCAAGAAGTTCTTACAAGCATCAACAATGCAACAATAACAAGAAGGAATTTGGGGTTCCTATCCTGTAAAACTGGCAACCCGATAGACGACTGCTGGCGTTGCGATGCCAATTGGGAAAAGAACCGAAAGAGGCTAGCCGACTGCGCCATTGGGTTCGGAAAACGAGCCATTGGCGGCAAAAACGGCAAATACTACATCGTGACTGACCCATCCGACAATGACGTGGTGAACCCAAAACCGGGCACACTCCGGCACGCCGTAATCCAAAACGAACCCTTATGGATCCTCTTCAAACGCGACATGGTCATCAAATTAAAGGCCGAGCTTCTGATGAACTCTTTCAAAACCATCGACGGGCGTGGCGTCTCCGTCCACATCGCCGGAGGGCCTTGCATTACCATTCAATTTGTGACCAACATTATAATCCACGGCATTAACATTCACGATTGCAAGCAAGGTGGGAACACTTACGTGAGAGACTCGCCGGAGCATTACGGTTGGAGGACGGTGTCAGACGGGGATGGGATATCTATATTTGGAGGAAGCCATGTTTGGATTGACCATTGCTCTTTGTCGAATTGCCGTGATGGGTTGATTGATGCGATTCATGGATCGACGGCTATTACTGTTTCAAACAATTACATGACTCATCATAACAAAGTTATGCTTTTAGGACACAGTGATTCCTATACTCAAGATAAGAACATGCAAGTCACCATTGCTTTTAACCATTTCGGTGAAGGTCTTGTTCAAAGAATGCCACGGTGTCGCCACGGATATTTCCATGTGGTAAATAATGACTATACTCATTGGATAATGTATGCCATTGGTGGAAGTGCATCTCCTACTATCAATAGCCAAGGAAATAGATACCTTGCTCCCAATAACCAAGATAGCAAAGAGGTGACAAAACGAGAGGATACACCACAAAGCAAGTGGAAGAATTGGAATTGGAGATCTGATGGAGATTTGATGTTGAATGGAGCATTCTTCGTAAGGTCCGGTGCTGGAGCATCGTCTAGCTATGCAAGAGCATCCAGCTTGAGCGCTAAGTCCTCGTCGCTAATCAATTCGATCACGGCAGGAGCTGGAGTGTTGAAATGTCGAAAAGGGTCTCGATGTTAG 1248 45.11 MENSNSVVIIMSIKLLVLSIIMLQMSSISSSSPVPDPDLVAQEVLTSINNATITRRNLGFLSCKTGNPIDDCWRCDANWEKNRKRLADCAIGFGKRAIGGKNGKYYIVTDPSDNDVVNPKPGTLRHAVIQNEPLWILFKRDMVIKLKAELLMNSFKTIDGRGVSVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNTYVRDSPEHYGWRTVSDGDGISIFGGSHVWIDHCSLSNCRDGLIDAIHGSTAITVSNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPNNQDSKEVTKREDTPQSKWKNWNWRSDGDLMLNGAFFVRSGAGASSSYARASSLSAKSSSLINSITAGAGVLKCRKGSRC* 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18585075 18586927 + Chy3G066740.1 Chy03g01694 223855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01694 415 Pfam Pectate lyase 176 330 IPR002022 -
Chy03g01694 415 SUPERFAMILY Pectin lyase-like 56 410 IPR011050 -
Chy03g01694 415 Gene3D - 66 408 IPR012334 -
Chy03g01694 415 SMART amb_all 141 338 IPR002022 -
Chy03g01694 415 PANTHER PECTATE LYASE 18-RELATED 16 412 IPR045032 GO:0030570
Chy03g01694 415 PRINTS Pollen allergen Amb family signature 213 234 IPR018082 -
Chy03g01694 415 PRINTS Pollen allergen Amb family signature 357 381 IPR018082 -
Chy03g01694 415 PRINTS Pollen allergen Amb family signature 386 409 IPR018082 -
Chy03g01694 415 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Chy03g01694 415 PRINTS Pollen allergen Amb family signature 113 138 IPR018082 -
Chy03g01694 415 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Chy03g01694 415 PRINTS Pollen allergen Amb family signature 149 165 IPR018082 -
Chy03g01694 415 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Chy03g01694 415 PANTHER PECTATE LYASE 16 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01694 Chy-Chr3:18585075 Chy09g00385 Chy-Chr9:3383806 0 dispersed
Chy12g01211 Chy-Chr12:16852088 Chy03g01694 Chy-Chr3:18585075 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01694 K01728 - csv:101208076 781.171