Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01718 ATGAAGACTGGATCCCCACTTAGGTTGTTGATTTTGATCGGTGCTCTTCTGTTACTTGATTCATCCACCGTGGCAGACCCCAGATCCCGAACCGTGAAGATACTATGTTCAACAGTGCTAGAGCACAACACAACTGTCTTCGTGCCCAATTTCGTGCGAACAATGCAATTAATAAGTGACCAAATGCGAACTGGTGGGTTTGGAGTGGCAGTTGCCGGTAAGGGGCCGGACGCCAACTACGGACTCGCTCAATGTTACGGAGATTTGTCGCTGATGGATTGTGTGTTGTGTTATGCGGAAGCCCGTACTGTCCTTCCTCAATGCTTCCCTTACAACGGCGGCCGGATTTTCCTGGATGGCTGCTTCATGAGGGCTGAGAACTACAGCTTTTATGAAGAATTTGCAGGGCCTCTTGACAGGGCTGAGTGTGGTAACAATTCCATCACCAACTCCATTTTTCGACAGTCGGCCAGGCAAGCTGTGGCTCGAGCAATTGAAACTGCACCCAGCAATGGCGGGTATGCCAGAATTCAAGTGGCTCCACCTGGAACCTCCAATGCCTCCGTTTACCTGTTGGCTCAGTGCTGGAGGAATTTGAATCGCACCTCCTGCACTTCCTGTTTGCAAAACGCCTCTGCTTCTATCTTGAAATGCTTGCCTCGATCCGAAGGAAGAGCCCTCAACACAGGTTGCTTCATGAGATACTCTAATCTTGATTTCTTAAATGCGGAAGCTTCAGCTTCAAGGTCAAGGGGTACTATTATAGAAATTGTAGTCTCACTGGTGAGCTCTGTTGCTGTTTTAGTCGTTGGAGTGTTAATTGGAATCTATGTCTGGAATAACAGATATGTAAAGAAGAAACGAAGAGGTTCAAACGATTCAAACAAGATGGCAAAAACACTAAACAATAGTAGCTTGAATTTCAAGTACTCTACCCTTGAAAAGGCAACAGGATCCTTTGCTGAGGCTAACAAGCTTGGACAAGGAGGATTTGGCACTGTTTATAAGGGAGTTCTGTCGGATGGAAGAGAGATAGCTGTGAAGAGGCTTTTCTTCAATAACAAACATAGAGCAGCAGATTTTTACAATGAAGTAAACATAATCAGTAGTGTAGAGCACAAAAATTTAGTACGGTTGCTTGGTTGTAGTTGTTCTGGACCTGAAAGTCTGCTTGTCTATGAATACCTTGCCAACAAGAGTCTCGACCGCTTCATTTTCGATCGAGATAGAGGTAAAGCACTCAATTGGGAGAAGAGATATGATATTATTGTAGGAACTGTTGAAGGTCTGGCCTACCTTCATGAGAACTCGAAAACCAAGATCATTCACAGAGACATCAAGGCTAGCAACATCCTGCTAGACTCCAAGCTTCGAGCCAAAATAGCTGATTTTGGATTAGCTAGATCATTTGAAGAAGACGAGAGTCACATCAGCACTGCCATTGCAGGAACATTGGGATACATGGCACCAGAGTACTTAGCTCATGGGCAGCTAACAGACAAAGCAGATGTGTACAGTTTTGGTGTGGTTTTGCTGGAGACTGTGACTGGCATACAAAACAGTAGAAGCAAAACCTCAGACTACTTGGAAAGCATAGTACTAATTGTATGGAGGCATTTTCAATCAGGAACAATTGAAAGTATATTGGATGCGAACCTTATGGTTGAGGAAGATAGGAGCGCAAAAGAGGAAATATTGAGAGTGGTGCAGATAGGGCTTCTTTGCACACAGGAGAGTGCATCTCTCCGACCCACAATGTCGAAGGTACTACAGATGCTGATGAAGAAGGAAGAGGAACTTCCGACGCCAACAAACCCACCGTTCATGGATGAGAGGACAATGGAATTAAACGACACCAGTGAGGACCCATCATGCTTCAACCTCACCGAAGCTTCTTCCTCAGCTGCTACCGTCACCCATAGTTCATTTCATCCCAGGTAA 1941 45.23 MKTGSPLRLLILIGALLLLDSSTVADPRSRTVKILCSTVLEHNTTVFVPNFVRTMQLISDQMRTGGFGVAVAGKGPDANYGLAQCYGDLSLMDCVLCYAEARTVLPQCFPYNGGRIFLDGCFMRAENYSFYEEFAGPLDRAECGNNSITNSIFRQSARQAVARAIETAPSNGGYARIQVAPPGTSNASVYLLAQCWRNLNRTSCTSCLQNASASILKCLPRSEGRALNTGCFMRYSNLDFLNAEASASRSRGTIIEIVVSLVSSVAVLVVGVLIGIYVWNNRYVKKKRRGSNDSNKMAKTLNNSSLNFKYSTLEKATGSFAEANKLGQGGFGTVYKGVLSDGREIAVKRLFFNNKHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEYLANKSLDRFIFDRDRGKALNWEKRYDIIVGTVEGLAYLHENSKTKIIHRDIKASNILLDSKLRAKIADFGLARSFEEDESHISTAIAGTLGYMAPEYLAHGQLTDKADVYSFGVVLLETVTGIQNSRSKTSDYLESIVLIVWRHFQSGTIESILDANLMVEEDRSAKEEILRVVQIGLLCTQESASLRPTMSKVLQMLMKKEEELPTPTNPPFMDERTMELNDTSEDPSCFNLTEASSSAATVTHSSFHPR* 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18702296 18704867 + Chy3G066980.1 Chy03g01718 223879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01718 646 CDD STKc_IRAK 326 595 - -
Chy03g01718 646 ProSiteProfiles Protein kinase domain profile. 320 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy03g01718 646 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 9 625 - -
Chy03g01718 646 ProSiteProfiles Gnk2-homologous domain profile. 135 240 IPR002902 -
Chy03g01718 646 Pfam Protein kinase domain 321 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy03g01718 646 Pfam Salt stress response/antifungal 50 128 IPR002902 -
Chy03g01718 646 Pfam Salt stress response/antifungal 146 237 IPR002902 -
Chy03g01718 646 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 9 625 - -
Chy03g01718 646 Gene3D Phosphorylase Kinase; domain 1 280 395 - -
Chy03g01718 646 SMART serkin_6 320 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy03g01718 646 SUPERFAMILY Protein kinase-like (PK-like) 305 624 IPR011009 -
Chy03g01718 646 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Chy03g01718 646 Gene3D Transferase(Phosphotransferase) domain 1 396 605 - -
Chy03g01718 646 ProSiteProfiles Gnk2-homologous domain profile. 29 130 IPR002902 -
Chy03g01718 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Chy03g01718 646 Gene3D - 29 130 IPR038408 -
Chy03g01718 646 Gene3D - 140 240 IPR038408 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01718 Chy-Chr3:18702296 Chy04g01441 Chy-Chr4:21039699 8.10E-168 dispersed
Chy03g01718 Chy-Chr3:18702296 Chy03g01719 Chy-Chr3:18705923 0 tandem
Chy02g01012 Chy-Chr2:6826258 Chy03g01718 Chy-Chr3:18702296 2.05E-15 transposed
Chy10g00886 Chy-Chr10:14646950 Chy03g01718 Chy-Chr3:18702296 4.40E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71157 PF00069 Pkinase 1.20E-48 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01718 - - csv:101210276 1228.39