Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01721 ATGGAGGATAATATGTATGGCATGCCTAAGTCCTTCCTTCCACCCGACAATCTTATCCTTCCCCTCGATTACCAATCCTTGCTTTCTTCCTCCAACTTCCGCCGCGACCCTATTCCTATGTTCGGATCTCAACAATTGCTTTCCCGCCCTACTTCCGCCATATCCCAAGCTGAGCCACCTTCCACAACTCCCGATTTTCCGATCCCTCAAGAAGACCTTCTCAGCGTCACCAAGGCCAAAATTGTCTCTCATCCTACCTATCCTCGCCTGCTTCATGCTTATATTGACTGCCAGAAGGTTGGAGCTCCTCCGGAGATAGCGTGCTTGTTGGAGGAAATCAGGCGAGAAAACGACAGTCAGGAACAAAATGGGATCTCCACGTGCTTCGGAGCCGATCCCGAGCTCGATGAGTTCATGGAAGCGTACTGTGACATGCTGGTGAAGTACAAATCAGATCTCTCAAGGCCCTTTCATGAAGCTTTCTCCTTCTTAAACAACATCCAACTCCAACTTTGCAACCTTGGCGCTGCCGCCTCCACTTCAACTCCTTCCAACGAGGATGCCATGTCATCAGATGATGAGCTTAACTGTGGTGAGAGAGAATTGCAAGATGGTCAAATGAGGTTAGAAGACAAAGGTCTTAAAGACATGCTCTTAAGTAGATTTGGCGGTCACATTGGTACCTTGAAGCTGGAATTTTCAAAGAAGAAGAAGAAAGGAAAACTACCTAAAGAGGGAAGGAAAGTACTGCTTGAGTGGTGGGATGTTCACTATAAATGGCCCTATCCCACGGAAGCTGATAAGGTTGCGCTGGCAGAGACAACAGGACTTGATCCCAAGCAAATTAACAATTGGTTTATTAATCAACGAAAGCGGCACTGGAAACCGTCTGAGAGTATGCAATTTGGAAATATGGACAATGCGGCTGAACAATTTTACGCTAGGCTTGACTCTTAA 957 46.81 MEDNMYGMPKSFLPPDNLILPLDYQSLLSSSNFRRDPIPMFGSQQLLSRPTSAISQAEPPSTTPDFPIPQEDLLSVTKAKIVSHPTYPRLLHAYIDCQKVGAPPEIACLLEEIRRENDSQEQNGISTCFGADPELDEFMEAYCDMLVKYKSDLSRPFHEAFSFLNNIQLQLCNLGAAASTSTPSNEDAMSSDDELNCGERELQDGQMRLEDKGLKDMLLSRFGGHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWDVHYKWPYPTEADKVALAETTGLDPKQINNWFINQRKRHWKPSESMQFGNMDNAAEQFYARLDS* 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18711428 18721557 - Chy3G067010.1 Chy03g01721 223882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01721 318 CDD homeodomain 247 297 IPR001356 GO:0003677
Chy03g01721 318 SMART KNOX1_2 75 119 IPR005540 GO:0003677|GO:0005634
Chy03g01721 318 MobiDBLite consensus disorder prediction 43 61 - -
Chy03g01721 318 MobiDBLite consensus disorder prediction 43 68 - -
Chy03g01721 318 SUPERFAMILY Homeodomain-like 234 305 IPR009057 -
Chy03g01721 318 SMART ELK_2 213 234 IPR005539 GO:0003677
Chy03g01721 318 Gene3D - 232 305 - -
Chy03g01721 318 Pfam Homeobox KN domain 253 292 IPR008422 GO:0003677|GO:0006355
Chy03g01721 318 SMART KNOX2_2 125 176 IPR005541 GO:0003677|GO:0005634
Chy03g01721 318 ProSitePatterns 'Homeobox' domain signature. 271 294 IPR017970 GO:0000981|GO:0006355
Chy03g01721 318 ProSiteProfiles 'Homeobox' domain profile. 233 296 IPR001356 GO:0003677
Chy03g01721 318 SMART HOX_1 235 300 IPR001356 GO:0003677
Chy03g01721 318 Pfam ELK domain 214 234 IPR005539 GO:0003677
Chy03g01721 318 Pfam KNOX1 domain 78 118 IPR005540 GO:0003677|GO:0005634
Chy03g01721 318 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 28 314 - -
Chy03g01721 318 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 2 28 314 - -
Chy03g01721 318 Pfam KNOX2 domain 129 174 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01625 Chy-Chr3:18173550 Chy03g01721 Chy-Chr3:18711428 5.16E-60 dispersed
Chy03g01721 Chy-Chr3:18711428 Chy07g00220 Chy-Chr7:1794759 1.43E-74 dispersed
Chy05g01035 Chy-Chr5:14963722 Chy03g01721 Chy-Chr3:18711428 1.06E-74 transposed
Chy10g00888 Chy-Chr10:14657309 Chy03g01721 Chy-Chr3:18711428 2.49E-32 transposed
Chy10g00887 Chy-Chr10:14651229 Chy03g01721 Chy-Chr3:18711428 4.80E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17775 PF03791 KNOX2 7.00E-22 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01721 - - csv:101210523 635.18