Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00025 ATGGGAAAGCATGGACCTTGCTGTCACTGTGGAGTTACAAGCACTCCTCTTTGGCGTAATGGACCTCCCGATAAACCGGTATTATGCAATGCATGTGGATCCCGTTGGAGAACAAAAGGAACACTTGCAAACTATACCCCTTTGCACGCTCGGGCTGATCCCGATGAATATGAAGACCACAGGGTTTCCAGGATGAAGAGCATTTCAATAAACAAAAACAAAGAAGTTAAACTGCTAAAAAGAAAGCTGCAACAAGCAGATGGGTCAATTGGGTGGATGATTCCCGACCAAGGTCAGGGTTATCATAGAGTAGCGGATGAAGATACAAGCAATAGATCCAGTTCGGGATCGGCCATATCTAATCCTGAGAGTTGTGCCCATTTCAGCAGTGCGGATGCTAGTGATTTGACAGGTCCAGCTCAGTCGATAGTGTGGGAGTCCATGGTGCCTTCCAGGAAGCGGACCTGTGTGAATCGTCCAAAGCAGTCCCCGGTTGAAAAACTAACTAAAGATCTATATAGTATCTTACGTGAGCAGAGATCTTCCTATTTCTCCGAAGCTTCTGAGGATGATTTGCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGTCATGGAAGTATTCTCATTAGGCATCCAAGTTCTATAGCTCGAGAAGAGGAATCTGAAGCTAGCTCAATTTCAGTTGATAACAAGCAATGCTTGGTAAATGAGGTCTATTCACCCCATTCTACAACTGTTCTTGTATGTAGTGAAAACAAGGGTATAAATTTCCCAACGTCTAGGATTGGAAAGATGAAGAATCCTTATGGATCAGGAGTACAACAAGAACAAATTAAAAGGAATGACTCTCATCACGAATGCTTACAAATTCTTGGAAACCATAACTCGCCCTTGTGTGATGTAGATATAAATGACATTATAAACTTCGAAGAGTTTGCAAGACAACTAACAAATGAAGAACAACAGCAATTAATGAAGTACCTACCACAGATTGATATCACTGAATTTCCCGAGACCCTCAAGAGCATGTTTGATAGCCCCTATTTCAAGGAGAACTTAACTTCCTTCCAACAACTACTTAGCGAGGGCGTTTTCGATGTTTCCTTCCTTGGAACAAAGGTCGAAGACTGCAAAACCTTGAAAAGGCTTGTCTTGTATAATTCTTCAAAATCCAAATGGGTTGAACGCTATCATCAACTGAAGAAATGTAAAAATGGTAGTAAAGGACTTCTTCTTTCCCATGCCAATGCGTCGGTGTCAAGTAACTTCACGAATGATAAGCAATTGTGTGAGAGCTACAATCAAAATATTCCAGAGGCAAAAACCATCTTGAAGAGTCCCAAAAGGTTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGATCATGCTTCAGTCCTAGAAGTTTATTTGCTTTGCCTCCTGATGGAAGCTCCCTCATGCTTGAATCCTTACAAGAAAGTTCAGATCAAGATCTATTGCTTGATGTACGGTCAAATAGTTCATTCCCGCAAGCCGAGCTCCTTCACCCAACCTCTCGTTCGGGTGGTAGGCAGGCCAGCACATGTAGTAGCTCAGTTCATCCACATCTTGTTCATCACTAA 1617 42.24 MGKHGPCCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDHRVSRMKSISINKNKEVKLLKRKLQQADGSIGWMIPDQGQGYHRVADEDTSNRSSSGSAISNPESCAHFSSADASDLTGPAQSIVWESMVPSRKRTCVNRPKQSPVEKLTKDLYSILREQRSSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSISVDNKQCLVNEVYSPHSTTVLVCSENKGINFPTSRIGKMKNPYGSGVQQEQIKRNDSHHECLQILGNHNSPLCDVDINDIINFEEFARQLTNEEQQQLMKYLPQIDITEFPETLKSMFDSPYFKENLTSFQQLLSEGVFDVSFLGTKVEDCKTLKRLVLYNSSKSKWVERYHQLKKCKNGSKGLLLSHANASVSSNFTNDKQLCESYNQNIPEAKTILKSPKRLVMKENKDPGENDGSCFSPRSLFALPPDGSSLMLESLQESSDQDLLLDVRSNSSFPQAELLHPTSRSGGRQASTCSSSVHPHLVHH* 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 262511 267865 + Chy4G067430.1 Chy04g00025 223924

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00025 538 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 297 409 IPR044867 -
Chy04g00025 538 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
Chy04g00025 538 CDD ZnF_GATA 6 51 IPR000679 GO:0006355|GO:0043565
Chy04g00025 538 MobiDBLite consensus disorder prediction 511 538 - -
Chy04g00025 538 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Chy04g00025 538 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Chy04g00025 538 MobiDBLite consensus disorder prediction 101 124 - -
Chy04g00025 538 Pfam Asx homology domain 285 369 IPR028020 -
Chy04g00025 538 Gene3D - 4 84 IPR013088 GO:0006355|GO:0008270
Chy04g00025 538 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Chy04g00025 538 PANTHER GATA TRANSCRIPTION FACTOR 26 1 538 - -
Chy04g00025 538 MobiDBLite consensus disorder prediction 110 124 - -
Chy04g00025 538 MobiDBLite consensus disorder prediction 511 532 - -
Chy04g00025 538 PANTHER OSJNBB0038F03.10 PROTEIN 1 538 IPR044589 -
Chy04g00025 538 Gene3D - 294 386 IPR038108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00025 - - - csv:101215311 1021.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00025 Chy-Chr4:262511 Chy10g01318 Chy-Chr10:17564398 6.47E-07 dispersed
Chy04g00025 Chy-Chr4:262511 Chy06g02089 Chy-Chr6:25081245 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy03g01261 CCT,ECH 116 369 C2C2-Gata Transcription Factor Family AT5G25830 57.4 1.0e-71 267.3
Chy02g00597 CCT,ECH 86 257 C2C2-Gata Transcription Factor Family AT4G34680 50.3 3.0e-37 152.5
Chy07g01272 CCT,ECH 25 185 C2C2-Gata Transcription Factor Family AT5G66320 62.3 7.2e-49 191.4
Chy07g01272 CCT,ECH 25 185 C2C2-Gata Transcription Factor Family AT3G51080 62.4 1.0e-44 177.6
Chy02g00597 CCT,ECH 95 256 C2C2-Gata Transcription Factor Family AT4G36240 52.9 1.5e-40 163.3
Chy07g01272 CCT,ECH 32 178 C2C2-Gata Transcription Factor Family AT4G36240 53.3 1.5e-37 153.3
Chy03g01261 CCT,ECH 118 369 C2C2-Gata Transcription Factor Family AT4G32890 53.0 1.3e-60 230.3
Chy04g00025 . 1 514 C2C2-Gata Transcription Factor Family AT4G17570 52.5 5.3e-136 481.5
Chy06g02089 . 69 571 C2C2-Gata Transcription Factor Family AT4G17570 52.9 1.4e-128 456.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17778 PF13919 ASXH 1.20E-08 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00025 Chy_Chr04 FPKM 8.337684 7.730083 8.4729 9.031461 15.542948 17.53261 15.442834 8.268966 7.356344 7.85447