Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00025 ATGGGAAAGCATGGACCTTGCTGTCACTGTGGAGTTACAAGCACTCCTCTTTGGCGTAATGGACCTCCCGATAAACCGGTATTATGCAATGCATGTGGATCCCGTTGGAGAACAAAAGGAACACTTGCAAACTATACCCCTTTGCACGCTCGGGCTGATCCCGATGAATATGAAGACCACAGGGTTTCCAGGATGAAGAGCATTTCAATAAACAAAAACAAAGAAGTTAAACTGCTAAAAAGAAAGCTGCAACAAGCAGATGGGTCAATTGGGTGGATGATTCCCGACCAAGGTCAGGGTTATCATAGAGTAGCGGATGAAGATACAAGCAATAGATCCAGTTCGGGATCGGCCATATCTAATCCTGAGAGTTGTGCCCATTTCAGCAGTGCGGATGCTAGTGATTTGACAGGTCCAGCTCAGTCGATAGTGTGGGAGTCCATGGTGCCTTCCAGGAAGCGGACCTGTGTGAATCGTCCAAAGCAGTCCCCGGTTGAAAAACTAACTAAAGATCTATATAGTATCTTACGTGAGCAGAGATCTTCCTATTTCTCCGAAGCTTCTGAGGATGATTTGCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGTCATGGAAGTATTCTCATTAGGCATCCAAGTTCTATAGCTCGAGAAGAGGAATCTGAAGCTAGCTCAATTTCAGTTGATAACAAGCAATGCTTGGTAAATGAGGTCTATTCACCCCATTCTACAACTGTTCTTGTATGTAGTGAAAACAAGGGTATAAATTTCCCAACGTCTAGGATTGGAAAGATGAAGAATCCTTATGGATCAGGAGTACAACAAGAACAAATTAAAAGGAATGACTCTCATCACGAATGCTTACAAATTCTTGGAAACCATAACTCGCCCTTGTGTGATGTAGATATAAATGACATTATAAACTTCGAAGAGTTTGCAAGACAACTAACAAATGAAGAACAACAGCAATTAATGAAGTACCTACCACAGATTGATATCACTGAATTTCCCGAGACCCTCAAGAGCATGTTTGATAGCCCCTATTTCAAGGAGAACTTAACTTCCTTCCAACAACTACTTAGCGAGGGCGTTTTCGATGTTTCCTTCCTTGGAACAAAGGTCGAAGACTGCAAAACCTTGAAAAGGCTTGTCTTGTATAATTCTTCAAAATCCAAATGGGTTGAACGCTATCATCAACTGAAGAAATGTAAAAATGGTAGTAAAGGACTTCTTCTTTCCCATGCCAATGCGTCGGTGTCAAGTAACTTCACGAATGATAAGCAATTGTGTGAGAGCTACAATCAAAATATTCCAGAGGCAAAAACCATCTTGAAGAGTCCCAAAAGGTTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGATCATGCTTCAGTCCTAGAAGTTTATTTGCTTTGCCTCCTGATGGAAGCTCCCTCATGCTTGAATCCTTACAAGAAAGTTCAGATCAAGATCTATTGCTTGATGTACGGTCAAATAGTTCATTCCCGCAAGCCGAGCTCCTTCACCCAACCTCTCGTTCGGGTGGTAGGCAGGCCAGCACATGTAGTAGCTCAGTTCATCCACATCTTGTTCATCACTAA 1617 42.24 MGKHGPCCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDHRVSRMKSISINKNKEVKLLKRKLQQADGSIGWMIPDQGQGYHRVADEDTSNRSSSGSAISNPESCAHFSSADASDLTGPAQSIVWESMVPSRKRTCVNRPKQSPVEKLTKDLYSILREQRSSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSISVDNKQCLVNEVYSPHSTTVLVCSENKGINFPTSRIGKMKNPYGSGVQQEQIKRNDSHHECLQILGNHNSPLCDVDINDIINFEEFARQLTNEEQQQLMKYLPQIDITEFPETLKSMFDSPYFKENLTSFQQLLSEGVFDVSFLGTKVEDCKTLKRLVLYNSSKSKWVERYHQLKKCKNGSKGLLLSHANASVSSNFTNDKQLCESYNQNIPEAKTILKSPKRLVMKENKDPGENDGSCFSPRSLFALPPDGSSLMLESLQESSDQDLLLDVRSNSSFPQAELLHPTSRSGGRQASTCSSSVHPHLVHH* 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 262511 267865 + Chy4G067430.1 Chy04g00025 223924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00025 538 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 297 409 IPR044867 -
Chy04g00025 538 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
Chy04g00025 538 CDD ZnF_GATA 6 51 IPR000679 GO:0006355|GO:0043565
Chy04g00025 538 MobiDBLite consensus disorder prediction 511 538 - -
Chy04g00025 538 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Chy04g00025 538 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Chy04g00025 538 MobiDBLite consensus disorder prediction 101 124 - -
Chy04g00025 538 Pfam Asx homology domain 285 369 IPR028020 -
Chy04g00025 538 Gene3D - 4 84 IPR013088 GO:0006355|GO:0008270
Chy04g00025 538 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Chy04g00025 538 PANTHER GATA TRANSCRIPTION FACTOR 26 1 538 - -
Chy04g00025 538 MobiDBLite consensus disorder prediction 110 124 - -
Chy04g00025 538 MobiDBLite consensus disorder prediction 511 532 - -
Chy04g00025 538 PANTHER OSJNBB0038F03.10 PROTEIN 1 538 IPR044589 -
Chy04g00025 538 Gene3D - 294 386 IPR038108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00025 Chy-Chr4:262511 Chy10g01318 Chy-Chr10:17564398 6.47E-07 dispersed
Chy04g00025 Chy-Chr4:262511 Chy06g02089 Chy-Chr6:25081245 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17778 PF13919 ASXH 1.20E-08 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00025 - - csv:101215311 1021.92