Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy04g00026 | ATGTGCTATTCTCAAGACAATTTTGTTTACTCTAGAGCCACCTATTATGGCAGCCCTGATTGCTATGGAACACCATCTGGGGCTTGTGGATTTGGTGAATTTGGAAGGACAGTGAATGATGGCAACGTTGCTGCAGTTTCATATCTTTATAGGAATGGTTCTGGTTGTGGTGCATGTTATCAGGTTAGGTGCACAAATCCAAAATATTGTAGTGGAAGTGGAGCAATTGTGGTGGTGACAGACCATGGTGAAGGGGATTACACTGACTTTATATTAAGCCCAAGAGCCTATGCAAAAATGGCTCATCCAAACACAGCCTTGCAGTTATTTTCATATGGTGTTGTTGATGTTGAATTCAGAAGGGTTTCTTGCCAATACCCATATTACAATACTCTCAAATTTAAGGTTCATGAACATAGCAGATTCCCTGATTATTTGGCCATTCTTATCATTTATGTTGCTGGCAAAAATGACATCACTGCTGTTGAACTGTGGCAGGAGGATTGCAAAGAATGGAAAGGAATGAGGAGATCCCATGGAGCTGTTTGGGATATGGCAAATCCTCCTAAAGATAACATAAAACTGAGGTTTCAAGTGAGTGGAAGTATGGGATATGGAAATTGGATTGTGGCAAACAATGCTCTCCCAAATTATTGGAAGCCAGGAGTTGCTTATGACACTGATATTAACCTCTATTAA | 699 | 40.34 | MCYSQDNFVYSRATYYGSPDCYGTPSGACGFGEFGRTVNDGNVAAVSYLYRNGSGCGACYQVRCTNPKYCSGSGAIVVVTDHGEGDYTDFILSPRAYAKMAHPNTALQLFSYGVVDVEFRRVSCQYPYYNTLKFKVHEHSRFPDYLAILIIYVAGKNDITAVELWQEDCKEWKGMRRSHGAVWDMANPPKDNIKLRFQVSGSMGYGNWIVANNALPNYWKPGVAYDTDINLY* | 233 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 273417 | 275145 | - | Chy4G067440.1 | Chy04g00026 | 223925 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy04g00026 | 232 | PRINTS | Expansin/Lol pI family signature | 112 | 128 | IPR007118 | GO:0005576 | |
| Chy04g00026 | 232 | PRINTS | Expansin/Lol pI family signature | 213 | 227 | IPR007118 | GO:0005576 | |
| Chy04g00026 | 232 | PRINTS | Expansin/Lol pI family signature | 7 | 22 | IPR007118 | GO:0005576 | |
| Chy04g00026 | 232 | PRINTS | Expansin/Lol pI family signature | 46 | 64 | IPR007118 | GO:0005576 | |
| Chy04g00026 | 232 | PRINTS | Expansin/Lol pI family signature | 172 | 186 | IPR007118 | GO:0005576 | |
| Chy04g00026 | 232 | PANTHER | EXPANSIN-B3 | 1 | 231 | - | - | |
| Chy04g00026 | 232 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 144 | 227 | IPR007117 | - | |
| Chy04g00026 | 232 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 26 | 129 | IPR007112 | - | |
| Chy04g00026 | 232 | Pfam | Expansin C-terminal domain | 133 | 216 | IPR007117 | - | |
| Chy04g00026 | 232 | Gene3D | - | 128 | 232 | IPR036749 | - | |
| Chy04g00026 | 232 | Gene3D | - | 2 | 125 | IPR036908 | - | |
| Chy04g00026 | 232 | SUPERFAMILY | PHL pollen allergen | 131 | 226 | IPR036749 | - | |
| Chy04g00026 | 232 | Pfam | Lytic transglycolase | 46 | 118 | IPR009009 | - | |
| Chy04g00026 | 232 | SUPERFAMILY | Barwin-like endoglucanases | 3 | 127 | IPR036908 | - | |
| Chy04g00026 | 232 | PANTHER | EXPANSIN-LIKE B1 | 1 | 231 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy02g01595 | Chy-Chr2:14621358 | Chy04g00026 | Chy-Chr4:273417 | 1.62E-38 | dispersed | |
| Chy04g00026 | Chy-Chr4:273417 | Chy04g00051 | Chy-Chr4:565264 | 1.73E-67 | dispersed | |
| Chy04g00026 | Chy-Chr4:273417 | Chy11g01152 | Chy-Chr11:17431592 | 2.27E-32 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy04g00026 | - | - | csv:101215548 | 500.36 |