Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00032 ATGCACCGGGACCGTCCTGCGCTTGGCGGCGTCGGCACCGGCTCCTCCAAGTTGGACGTCACTCCCATCGATCGGAAGCGCATCAACGACGCTCTCGATAAACAACTGGAGCGATCCTCACCATCCACTTCTCGCACCGTCATTAACGGCAAGGATAATAAGCCCTCTGCACCTCAGTCCTTGTTAATGCCGAAGCCTCTTTCTGATCAGAGGGACTCTCGTTCTGCCTCTCTCTCTAAGACTAACTGCTCTGAGGAATCTGAGACTGACAGTGAAGAGTCAGATGTCAGTGGGTCTGATGGCGATGATACATCTTGGATTTCATGGTTTTGTAATCTGCGTGGAAACGAGTTCTTTTGTGAAGTGGATGATGACTATATACAAGATGATTTTAACCTCTGTGGGTTAAGCAGCCAAGTTCCATACTATGACTATGCTCTTGATTTGATTCTGGATGTTGAATCCTCTAATGGTGATATGTTTACAGAGGAACAGAATGAACTAGTTGAATCTGCAGCTGAAATGCTTTACGGTCTAATTCATGCGAGATACATATTGACAAGCAAAGGCATGGCTGCCATGCTGGACAAATTCAAGAATTATGACTTTGGGAGATGCCCCAGAGTTTACTGCTGTGGACAGCCATGCCTTCCTGTTGGTCAATCAGACATTCCTAGAGCAGGCACCGTCAAGATATACTGTCCAAGATGTGAGGATGTTTATTATCCTCGATCGAAGTTTCAAGACATTGATGGGGCTTATTTTGGAACTACATTTCCTCACCTCTTCCTGATGACATATGGACACCATAAGCCACAAAAATCCGTTCAGAGTTACGTTCCAAGAGTGTTTGGATTCAAGATCCACAAGCCATGA 876 45.89 MHRDRPALGGVGTGSSKLDVTPIDRKRINDALDKQLERSSPSTSRTVINGKDNKPSAPQSLLMPKPLSDQRDSRSASLSKTNCSEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSNGDMFTEEQNELVESAAEMLYGLIHARYILTSKGMAAMLDKFKNYDFGRCPRVYCCGQPCLPVGQSDIPRAGTVKIYCPRCEDVYYPRSKFQDIDGAYFGTTFPHLFLMTYGHHKPQKSVQSYVPRVFGFKIHKP* 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 320505 325316 + Chy4G067500.1 Chy04g00032 223931

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00032 291 PANTHER CASEIN KINASE II SUBUNIT BETA 1 290 - -
Chy04g00032 291 PRINTS Casein kinase II regulatory subunit family signature 202 223 IPR000704 GO:0005956|GO:0019887
Chy04g00032 291 PRINTS Casein kinase II regulatory subunit family signature 122 136 IPR000704 GO:0005956|GO:0019887
Chy04g00032 291 PRINTS Casein kinase II regulatory subunit family signature 224 245 IPR000704 GO:0005956|GO:0019887
Chy04g00032 291 PRINTS Casein kinase II regulatory subunit family signature 251 268 IPR000704 GO:0005956|GO:0019887
Chy04g00032 291 PRINTS Casein kinase II regulatory subunit family signature 105 121 IPR000704 GO:0005956|GO:0019887
Chy04g00032 291 PRINTS Casein kinase II regulatory subunit family signature 177 198 IPR000704 GO:0005956|GO:0019887
Chy04g00032 291 MobiDBLite consensus disorder prediction 1 101 - -
Chy04g00032 291 PANTHER CASEIN KINASE II SUBUNIT BETA 1 290 IPR000704 GO:0005956|GO:0019887
Chy04g00032 291 MobiDBLite consensus disorder prediction 35 56 - -
Chy04g00032 291 ProSitePatterns Casein kinase II regulatory subunit signature. 206 237 IPR000704 GO:0005956|GO:0019887
Chy04g00032 291 MobiDBLite consensus disorder prediction 20 34 - -
Chy04g00032 291 Pfam Casein kinase II regulatory subunit 105 287 IPR000704 GO:0005956|GO:0019887
Chy04g00032 291 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 98 202 IPR016149 GO:0005956|GO:0019887
Chy04g00032 291 Gene3D - 203 276 - -
Chy04g00032 291 MobiDBLite consensus disorder prediction 70 84 - -
Chy04g00032 291 SUPERFAMILY Casein kinase II beta subunit 103 290 IPR035991 GO:0005956|GO:0019887
Chy04g00032 291 SMART CK_II_beta_2 105 287 IPR000704 GO:0005956|GO:0019887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00032 K03115 CSNK2B; casein kinase II subunit beta - csv:101211694 581.637
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00032 Chy-Chr4:320505 Chy05g00631 Chy-Chr5:7781945 1.69E-154 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g570 . . . . . . . . . . Cma02g01578 . Car02g01342 . . . Cpe05g00212 . . . . . . . . . . . . . . Cone8ag0436 Cone12ag0421 Cone6ag0629 Cone9ag0632 . . Chy04g00032 . . Blo19g00259 . . . . . . Sed01g4060 . Cmo19g00397 . . . . . . Bhi05g00570 Tan07g1906 Cmetu04g2898 . Hepe06g1721 . Lcy12g1882 Cla09g01203 Cam09g1270 Cec09g1284 Cco09g1318 . . Cre09g1230 . Csa03g04669 . Cme04g00042
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000972 4 4 2 2 3 2 4 2 2 2 2 2 3 2 2 3 2 6 4 2 2 3 2 2 2 2 2 10 2 2 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00032 Chy_Chr04 FPKM 11.648972 12.439178 17.263491 16.675541 13.395088 13.827156 15.266776 17.227942 16.089077 15.926316