Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00035 ATGAGTGGAATGGAGCATTTGGAGCAGAGGAGGAAGAGGAGGAAGAAGAGCAGATCGGATTCCAGCAGTGATAATGTTCGAGGTAAAGCTTTGAGTGGTAAGAGGGTTTATGATTGGGAACATTCTAGTGTTAATCGAACACTGAAGAAGGATTGTGATGATAGTGATGGGGATAGTTTAGAAGTAATTGATGCTCTAACATTTGGTAAAGAAGGTGGGGATTCGGTTACATTTGTAGGTTCTGAGAGTTCGGGGTTGAAGAATGTTAAAGAATTTTATTCGAAGGGGAATGCTGATTTTATTGATTTGGAGGATGATGTTATTTTGTTAGATGAGGAAGAGGGATTTGAATCTGTGAACTCTATGTGTTCATTTTCAAAGGGAAAAGAGGGTGTAGAGATATCTCCAGATAAAAGTGTGGGGGGAAGTGATTGTTTGAACTCTAATGGTTGTGAGAGTGGTGGTTGCTCATCCAAGACCGAGCCAACGTGTTCTTCGGATGATGCTGTAGATGAGTCCACTGAATTCGTATCCTCAAGTGAAGAGGAGTTTGACGACTCTAGTGATAGAAATTACGAATTAGAAGAATCGGACGGGTTAAATTCAGAGTCCTCTAGTTCAGAAGATGAGAAGTGTCATGGAAGTTACTATGCAGAAATAGGAGATACAAGGGAGAGAAAGGAGAGAACGAAAAAGGAAAATTTGCTTGAAGGTGGATTAAGAAGGAAAGCTTTTGGCTTAGATATATTTGTTGATTATGACGAGGATGGACATAAGAAAAATGATGAGGTTGGTGAACAGGTTAACTGTATTGCACGAAGAACACGTTCACGGTTTGGTTTTAGGGCTAGGAAAATAAATACCAGTCTTGGAACTGTCAGTCAGCCATTCAATGTTGATGAGGAAGAGTCGGATGTTCAGTGTGATGAGAAAGAAGTAGGTTCTTCATCAAGGCATGACAGTGATAGTACTACTGGTGATTCTTGTGATAGTGATAGTACTACTGGTGATGAAATTTACAGGCCATGGGGCTGGAATAGTAGTAAAAAGAAAACTCAGTTCAACAATCAAAGTAATGATGATGATTTCTTATCTGAACAAAAAGATGATAGCTTCTTATCTGAAAAAAAAGATGATGATACTAACAAGGTTGAGAGTTTTCATGTGGGGAGTAAACTTCAGAACAGTAGAAGCTCACCTGAAATAAATAAACACAATCGGAGCATCGATTTTCAGAAGGTTTGTCCAGAGAATGGCCATGAATTTCGTGATATTTTTAGAACAAGAGGCCGTGGTAGGCCAAGAGGTATTGATGTTTTCAATATTCTTATAGATTCCATAATTGCGGACAAAGAACTGCCTTCAGTTGAGTTAGATCTTCCTACAAGTCAACTCTCCCAAATGCCTCTTCCTTTGAAGTTTGGATTGATGGAATCACGTCTTCCAGAGAAGTCAGAAGAGGAAAAAGAATTGGACAAACTCTGGGCGGAACTTGACTTTGCTATCAGATCCAGCGAGATTGGGCTGGTGGATTGTAATACAGTTGAACATGAAGATGCCTTTCCTTCAAAGCTTGAGCAAGTGGATCTGTGTCTTCGCGGTGATCATCAGCTCATACTTGATGAACAAATTGGACTTAAATGCAGATGCTGTTCATATGTCAAATTGGAAATCAGGAATATTGCACCTTCTTTTGATACAAATCCACATGGAAAGTCAAAGAAGAAGAAATCTGACTTATTTGAGCATGTTAAATACGATGGCCTTGAACAGGATGCTGATTGTGATGCCCATGACGGTCCTGATTCACGATCTCATTTTGGACAAACTGTGTGGGATATCATTCCTGGCATAAGGAATAGCATGTACCCACACCAGCGGGAAGGCTTTGAATTTATTTGGAAAAATATAGCCGGGGGGATTTATCTTGATGAGTTAAGAGAAATGGACGGCTTAAACAATGGGAGTGGATGCATTGTATCACATGCTCCTGGAACAGGAAAAACTCGTCTGACAATTAATTTTCTTCAGACATACATGAAATTAAATCCTACATGTCGGCCTATGATTATTGCACCTAGCAGCATGCTCCTTACCTGGGAAGAGGAGTTTTTGAAGTGGGATGTTGGCATTCCCTTTCATAACCTGAATAAGCGAGATTTTTCTTTCGAGGAGAATATGTCAGCCCTTAAGTTTTTGATGCAAGCTTCTCCATCAGGTCAAAATGTGGACAACGTACGGCTTGTAAAACTATTTTCCTGGAAAAAGGAGAAAAGCATCTTGGGAATTAGTTACAGATTGTTTGAAAGATTAGCTGGAGTTCGGAATGACTCTAAATGTGATAAAGTAAGGAATGTCCTATTGGAGCTCCCTGATCTTGTGGTCTTTGATGAAGGGCACATTCCACGCAACGATGATAGTCTTATTTGGATGGCTTTGTCTAAAATTAAGACAGAAAGGCGCATCATTCTCTCTGGAACTCCTTTCCAGAATAATTTTACTGAATTTTCTAATACACTTAGGCTGGTGAGGCCAAATTTTGCAAAAGAAAGTAATACTGAAGCTGATGGATGCATGGATAAGAAGCGTGGGCGACCAAAAAATATTACAAGAGGAAAATGGGACCTTTTGATTAGTTCCATTGGCAGAACTTCTGAGCTGGAAAGTGCGGAATTGAAAGAAATCAGGGCCTTGATCAATCCATTTGTGCATGTGTATAGGGGCAGCATACTACAAGAGAAACTTCCAGGATTGAGGAAATCTACGGTTATATTATGGCCAGCAGAGCTGCAGAAGAATTTTCTTGAGAGAGTTCAAGCAAGGAAGAATTCTTTTGAAGTGGAATATGTTGAGTCCTTGATCTCTGTACATCCGTCCCTGATACTGAAAAGTGATAAAGGAGATTGTGAATTTGACAAGGACATGTTAGAGAGGTGTAGATTGAATCCTGAACTAGGAGTGAAACTACAGTTTCTCCTGGAAATTATACGTCTGAGTGAAGCTTTGAATGAAAAAGTTTTAGTTTTCAGCCAATATATTGAACCATTGTCCTTTATAGAAGAACATCTTAAGTTTCATTTTAAATGGACTGAAGGGATAGAGTTGTTTCATATGGATGGAAAACGCGAGATAAAGAAACGACAAGCATTAATAAATACCTTTAACGATCCAATAAGTGAAGTTAGGGTATTGCTTGCATCTACAAAGGCTTGCTCAGAAGGTATAAACCTTGTTGGGGCTTCAAGGGTAGTTTTACTTGATGTTGTATGGAATCCCTCGGTGGAAAGGCAAGCCATATGTCGGGCATATAGACTTGGTCAGAAAAAGGTTGTTTATGTGTACCATCTCATTACCTCTGGAACAAGGGAAGAAGAAAAGTATAGTCGACAAATAGAAAAAGATCGATTGTCTCAGTTAGTTTTTTCGTCTGAACAAAACAGTAATGACGTCAAAGTATCTTCCAGAGATTTGGATGACGGAATTTTGGAAGCTGTACTTCAACATGAAAAGTTTAAAAAGATATTCCAAAAGATAATATACCAATCGAAGGACTCCTGCATGAACGAGAATTTTGGCTTGGCAGACAAGGAGTGA 3594 39.32 MSGMEHLEQRRKRRKKSRSDSSSDNVRGKALSGKRVYDWEHSSVNRTLKKDCDDSDGDSLEVIDALTFGKEGGDSVTFVGSESSGLKNVKEFYSKGNADFIDLEDDVILLDEEEGFESVNSMCSFSKGKEGVEISPDKSVGGSDCLNSNGCESGGCSSKTEPTCSSDDAVDESTEFVSSSEEEFDDSSDRNYELEESDGLNSESSSSEDEKCHGSYYAEIGDTRERKERTKKENLLEGGLRRKAFGLDIFVDYDEDGHKKNDEVGEQVNCIARRTRSRFGFRARKINTSLGTVSQPFNVDEEESDVQCDEKEVGSSSRHDSDSTTGDSCDSDSTTGDEIYRPWGWNSSKKKTQFNNQSNDDDFLSEQKDDSFLSEKKDDDTNKVESFHVGSKLQNSRSSPEINKHNRSIDFQKVCPENGHEFRDIFRTRGRGRPRGIDVFNILIDSIIADKELPSVELDLPTSQLSQMPLPLKFGLMESRLPEKSEEEKELDKLWAELDFAIRSSEIGLVDCNTVEHEDAFPSKLEQVDLCLRGDHQLILDEQIGLKCRCCSYVKLEIRNIAPSFDTNPHGKSKKKKSDLFEHVKYDGLEQDADCDAHDGPDSRSHFGQTVWDIIPGIRNSMYPHQREGFEFIWKNIAGGIYLDELREMDGLNNGSGCIVSHAPGTGKTRLTINFLQTYMKLNPTCRPMIIAPSSMLLTWEEEFLKWDVGIPFHNLNKRDFSFEENMSALKFLMQASPSGQNVDNVRLVKLFSWKKEKSILGISYRLFERLAGVRNDSKCDKVRNVLLELPDLVVFDEGHIPRNDDSLIWMALSKIKTERRIILSGTPFQNNFTEFSNTLRLVRPNFAKESNTEADGCMDKKRGRPKNITRGKWDLLISSIGRTSELESAELKEIRALINPFVHVYRGSILQEKLPGLRKSTVILWPAELQKNFLERVQARKNSFEVEYVESLISVHPSLILKSDKGDCEFDKDMLERCRLNPELGVKLQFLLEIIRLSEALNEKVLVFSQYIEPLSFIEEHLKFHFKWTEGIELFHMDGKREIKKRQALINTFNDPISEVRVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAICRAYRLGQKKVVYVYHLITSGTREEEKYSRQIEKDRLSQLVFSSEQNSNDVKVSSRDLDDGILEAVLQHEKFKKIFQKIIYQSKDSCMNENFGLADKE* 1198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 331704 337027 - Chy4G067530.1 Chy04g00035 223934

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00035 1197 MobiDBLite consensus disorder prediction 151 235 - -
Chy04g00035 1197 Gene3D - 595 876 IPR038718 -
Chy04g00035 1197 MobiDBLite consensus disorder prediction 290 365 - -
Chy04g00035 1197 SMART helicmild6 1017 1106 IPR001650 -
Chy04g00035 1197 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 4 1192 IPR044567 GO:0080188
Chy04g00035 1197 SMART ultradead3 618 872 IPR014001 -
Chy04g00035 1197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 578 849 IPR027417 -
Chy04g00035 1197 MobiDBLite consensus disorder prediction 174 192 - -
Chy04g00035 1197 Gene3D - 922 1190 IPR027417 -
Chy04g00035 1197 MobiDBLite consensus disorder prediction 309 326 - -
Chy04g00035 1197 Pfam SNF2-related domain 653 943 IPR000330 GO:0005524|GO:0140658
Chy04g00035 1197 Pfam Helicase conserved C-terminal domain 988 1106 IPR001650 -
Chy04g00035 1197 MobiDBLite consensus disorder prediction 1 31 - -
Chy04g00035 1197 CDD SF2_C_SNF 985 1117 - -
Chy04g00035 1197 MobiDBLite consensus disorder prediction 204 235 - -
Chy04g00035 1197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 792 1145 IPR027417 -
Chy04g00035 1197 MobiDBLite consensus disorder prediction 151 173 - -
Chy04g00035 1197 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 649 846 IPR014001 -
Chy04g00035 1197 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 994 1151 IPR001650 -
Chy04g00035 1197 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 4 1192 - -
Chy04g00035 1197 MobiDBLite consensus disorder prediction 346 361 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00035 K10875 RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] - csv:105435045 2227.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00035 Chy-Chr4:331704 Chy10g00356 Chy-Chr10:8830207 6.05E-108 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g573 . . . . . . . . . . Cma02g01579 . Car02g01343 . . . Cpe05g00211 . . . . . . . . . . . . . . Cone8ag0437 Cone12ag0422 . . . . Chy04g00035 . . . Bda07g00129 Bda09g00688 Bpe08g00872 Bpe11g00360 . . Sed01g4061 Cmo02g01621 Cmo19g00395 . . . . . . Bhi05g00566 Tan07g1908 Cmetu04g1824 Lac11g2350 Hepe06g1725 . . Cla09g01200 Cam09g1268 Cec09g1282 Cco09g1316 . . Cre09g1228 . Csa03g04668 . Cme04g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005251 3 2 0 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 3 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17779 PF00176 SNF2_N 1.20E-19 CL0023 Chy TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00035 Chy_Chr04 FPKM 1.622988 0.0 4.660384 5.260999 5.74124 7.354304 6.99975 0.0 0.0 0.0