Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00042 ATGGCTGTTCAGGCTCAATATCCTTCTAATGTTTTGTTATTGAACAGGAATGGTCAAGAAGGGCATGATTATTCATTACAGCCACAACCAGGGGGTTTTCTTGACCAAACTCATATGGTGTTCAACAATAATATAGGAAGCAATTCTCGAAAGAGAGGAAGAGAAATCTCTACTGCTACTACAACCATCGCGACTCCAATCAATCTATCTCCATTACAGCACCAGCCTTGTCCTCCTCTTCTTGTTGACCTTGCTAAGCTCCATAACCACCAAAACAATGTCGTCTCCACCGGCCTCCGCCTCTCCTCCGGTGATCATCAACAGAACCAACACCAACACCAACAACATAATCAAAACCACAATCTCGTTCGTCAATCATCATCCGCTTTCTTACCCCTACTAACAGAGGATTTCGCCTCAAATTTCAAACGGCATCAAGAAGAAATAGACCAATTCCTTCAAGCACAGGAAGAGCAACTACGGCGCACATTAGCAGAGAAAAGACAGAGACACTACCGTGCGCTCCTCGATGCGGTGGAGGAATCGGTAGCCAGAAGGTTACGAGAGAGGGAGGCGGAGGTGGAGAAAGCCACGCGCCGGAATGCCGAATTAGAAGCACGCGCCGCCCAGCTAAGTGTCGAGGCACAGGTCTGGCAAGCAAAGGCTAGGGCACAGGAAGCCACCGCCGTATCCCTACAAGCACAACTGCAACAGGCGATGTCCGGCGGTGGATGCGACGGAGGAGATGGCGGAACCGTGGGCGTGGAAGGACAAGCCGATGACGCAGAGTCGGCTCATATTGACCCGGAACGAGTCGTGATTTCGGGACCGAGTTGCAAAGCGTGTAGAAAACGGTTGGCTTCGATGCTGATTTTGCCGTGCCGTCATCTCTGCCTCTGTACAGACTGTGACCAAGTGGCTCAGACTTGCCCGTTATGCCATTCCAAACGAAGTTCCAGTGTAGAGGTCTATCTCTCTTAG 981 50.46 MAVQAQYPSNVLLLNRNGQEGHDYSLQPQPGGFLDQTHMVFNNNIGSNSRKRGREISTATTTIATPINLSPLQHQPCPPLLVDLAKLHNHQNNVVSTGLRLSSGDHQQNQHQHQQHNQNHNLVRQSSSAFLPLLTEDFASNFKRHQEEIDQFLQAQEEQLRRTLAEKRQRHYRALLDAVEESVARRLREREAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAVSLQAQLQQAMSGGGCDGGDGGTVGVEGQADDAESAHIDPERVVISGPSCKACRKRLASMLILPCRHLCLCTDCDQVAQTCPLCHSKRSSSVEVYLS* 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 463976 465323 - Chy4G067600.1 Chy04g00042 223941

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00042 326 ProSiteProfiles Zinc finger RING-type profile. 279 314 IPR001841 -
Chy04g00042 326 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 325 - -
Chy04g00042 326 Coils Coil 180 221 - -
Chy04g00042 326 PIRSF SBP1_RNase_bind 1 326 IPR017066 -
Chy04g00042 326 Pfam Zinc finger, C3HC4 type (RING finger) 278 316 - -
Chy04g00042 326 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 325 IPR017066 -
Chy04g00042 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 326 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00042 K19042 BOI; E3 ubiquitin-protein ligase BOI and related proteins [EC:2.3.2.27] - csv:101213134 572.392
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy04g00042 Chy06g02109 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00042 Chy-Chr4:463976 Chy11g01014 Chy-Chr11:14322232 6.95E-15 dispersed
Chy03g01729 Chy-Chr3:18772230 Chy04g00042 Chy-Chr4:463976 1.22E-42 transposed
Chy07g00143 Chy-Chr7:1237203 Chy04g00042 Chy-Chr4:463976 6.03E-35 transposed
Chy04g00042 Chy-Chr4:463976 Chy06g02109 Chy-Chr6:25262454 6.31E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g582 . Blo03g00131 Bda06g01301 Bda08g00614 Bpe05g00542 Bpe07g00204 Bma07g00980 . Cmo06g00856 Cmo16g01141 Cma02g01583 . Car02g01346 . Sed01g4069 Cpe14g00902 Cpe05g00208 Bhi11g00101 Tan01g2125 Cmetu06g1180 Lac11g2359 Hepe06g1729 Mch10g1614 . Cla10g00197 Cam10g0203 Cec10g0208 Cco10g0208 Clacu10g0205 Cmu10g1048 Cre10g0456 Cone8ag0444 Cone12ag0605 Cone6ag0623 . Lsi07g01237 . Chy04g00042 Cme06g02508 Blo03g00823 Blo19g00261 Bda07g00844 . Bpe08g00864 Bpe11g00356 Bma05g00399 Bma12g00679 . Cmo02g01625 . Cma06g00833 Cma16g01091 . Car16g01033 . . . . . . . . . Cla09g01186 Cam09g1250 Cec09g1266 Cco09g1300 . . Cre09g1214 . Csa03g04659 Chy06g02109 Cme04g00054
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000944 6 2 3 4 5 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 5 1 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00042 Chy_Chr04 FPKM 20.734463 20.6691 23.901054 23.508642 29.466257 28.32073 33.963448 40.365128 38.77644 41.738934