Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00049 ATGGCTCCCACCTCAGCTCTGGCGAAGTATAAGCTCGTCTTTCTCGGCGACCAGTCTGTTGGCAAAACCAGCATCATTACACGCTTCATGTACGATAAATTCGACAATACATATCAGGCTACCATTGGGATTGATTTTCTCTCAAAAACCATGTATCTGGAAGATCGTACCGTTCGACTGCAGTTGTGGGACACTGCTGGACAGGAAAGATTCAGAAGTTTAATACCAAGCTATATCAGGGACTCATCTGTTGCTGTCATCGTTTATGATGTTGCAAGCCGGCAAACTTTCCTAAACACTTCAAAGTGGATTGAGGAGGTGCGCACTGAGAGAGGCAGTGATGTCATTATAGTGCTTGTTGGGAACAAAACGGACCTCGTGGAGAAGAGGCAAGTCTCCATAGAGGAAGGAGAAGTCAAAGCCCGTGAACTAAATGTCATGTTTATCGAAACAAGTGCTAAAGCTGGATTCAATATCAAGGCACTTTTCCGAAAAATTGCTGCAGCATTGCCGGGAATGGAAACTCTCTCATCAACAAAACAAGAAGACATGGTGGATGTTAACCTGAAGTCCACAGGAAGTGGTGCCGCACAATCCCAGCCGCAGTCGAGTGGATGCGCGTGCTAA 627 46.09 MAPTSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTSKWIEEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEVKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDMVDVNLKSTGSGAAQSQPQSSGCAC* 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 547440 551529 + Chy4G067670.1 Chy04g00049 223948

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00049 208 CDD Rab6 10 170 - -
Chy04g00049 208 SMART ran_sub_2 15 208 - -
Chy04g00049 208 PANTHER DRAB5-RELATED 1 208 - -
Chy04g00049 208 PANTHER GTP-BINDING PROTEIN RAB6 1 208 - -
Chy04g00049 208 Pfam Ras family 11 169 IPR001806 GO:0003924|GO:0005525
Chy04g00049 208 PRINTS Transforming protein P21 ras signature 113 126 - -
Chy04g00049 208 PRINTS Transforming protein P21 ras signature 10 31 - -
Chy04g00049 208 PRINTS Transforming protein P21 ras signature 33 49 - -
Chy04g00049 208 PRINTS Transforming protein P21 ras signature 51 73 - -
Chy04g00049 208 PRINTS Transforming protein P21 ras signature 148 170 - -
Chy04g00049 208 ProSiteProfiles small GTPase Rho family profile. 3 176 - -
Chy04g00049 208 TIGRFAM small_GTP: small GTP-binding protein domain 9 166 IPR005225 GO:0005525
Chy04g00049 208 Gene3D - 5 203 IPR027417 -
Chy04g00049 208 SMART rab_sub_5 10 173 - -
Chy04g00049 208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 182 IPR027417 -
Chy04g00049 208 SMART rho_sub_3 12 172 IPR001806 GO:0003924|GO:0005525
Chy04g00049 208 ProSiteProfiles small GTPase Ras family profile. 5 208 IPR001806 GO:0003924|GO:0005525
Chy04g00049 208 ProSiteProfiles small GTPase Rab1 family profile. 2 208 - -
Chy04g00049 208 SMART ras_sub_4 7 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00049 K07893 RAB6A; Ras-related protein Rab-6A - csv:101204395 365.155
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00723 Chy-Chr2:4391765 Chy04g00049 Chy-Chr4:547440 2.73E-101 dispersed
Chy04g00049 Chy-Chr4:547440 Chy12g00493 Chy-Chr12:6553882 1.23E-46 dispersed
Chy04g00049 Chy-Chr4:547440 Chy04g02125 Chy-Chr4:26535510 2.09E-42 transposed
Chy04g00049 Chy-Chr4:547440 Chy06g02083 Chy-Chr6:25014837 2.25E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g618 . . . . . . . . . . Cma02g01585 . Car02g01349 . . . . . . . . . . . . . . . . . . Cone8ag0448 Cone12ag0437 . . . . Chy04g00049 . . . . . . . . . . Cmo02g01628 . . . . . . . . . . . . . . Cla09g01177 Cam09g1242 Cec09g1258 . . . Cre09g1206 . Csa03g04651 . Cme04g00063
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001834 3 2 2 3 3 1 4 2 1 1 1 1 1 2 2 4 1 5 3 2 2 2 2 2 2 1 2 4 3 2 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00049 Chy_Chr04 FPKM 0.0 0.0 0.0 0.0 16.765871 14.934114 14.418995 0.0 0.0 0.0