Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00082 ATGGCTGGTTTGGATTTAGGCAATCGCTATATTCACCAACTTCAAACCCCTAATTTCAACCTCCCCATCCACCATCACCACCACCACCATCCCGACTCTCAATCTCGTCACGATGACGATGATTCCCCCCATCATCCCTTGGAATTTGTCCCCACCACCGCCACCACCACCGATATGGTTGCCTCTCGTCGTCCACGCGGTCGTCCACCCGGTTCTAAAAACAAGCCAAAGCCACCGGTCATCATAACTCGGGAAAGCGCCAATACCCTAAGGGCTCATATTCTTGAGGTTGGTAGTGGGTGCGACGTCTTCGATTGCATCGCCACTTATGCTCGTCGTCGCCAACGCGGGATCTGCATCTTAAGTGGGAACGGAATGGTAACCAATGTCAACTTACGGCAACCGACTGCAACGGGGTCTGTGTTAACTCTACAAGGGAGGTTTGAGATATTATCCCTTTCTGGATCTTTCTTGCCGCCGCCTGCTCCACCTGGCGCCACTAGTTTGACTATATACTTAGCCGGTGGACAAGGGCAAGTGGTCGGTGGAAACGTTGTGGGAGAATTAGTGGCAGCAGGGCCAGTGACAATCATCGCTGCATCGTTTACAAATGTAGCCTATGAGAGATTGCCACTAGACGATCAAGAACAAGAACAACAAGAACAAGAACAAGATCAGATGCAACCACCAACTTCGCAGGGTGGTGGCAATAACGTCGGTGGAGGTGGAAGCAATAACCCATTTTCAGATCCATCTTCAGGGCTTCCTTTCTTCAATTTGCCTATAAATATGCAAAACCAAATTCAACTACCATTCTAA 819 49.57 MAGLDLGNRYIHQLQTPNFNLPIHHHHHHHPDSQSRHDDDDSPHHPLEFVPTTATTTDMVASRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGSGCDVFDCIATYARRRQRGICILSGNGMVTNVNLRQPTATGSVLTLQGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGNVVGELVAAGPVTIIAASFTNVAYERLPLDDQEQEQQEQEQDQMQPPTSQGGGNNVGGGGSNNPFSDPSSGLPFFNLPINMQNQIQLPF* 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 850886 851704 + Chy4G068000.1 Chy04g00082 223981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00082 272 MobiDBLite consensus disorder prediction 222 256 - -
Chy04g00082 272 Pfam Plants and Prokaryotes Conserved (PCC) domain 91 204 IPR005175 -
Chy04g00082 272 CDD DUF296 91 174 IPR005175 -
Chy04g00082 272 SUPERFAMILY AF0104/ALDC/Ptd012-like 87 216 - -
Chy04g00082 272 MobiDBLite consensus disorder prediction 214 256 - -
Chy04g00082 272 Gene3D - 90 224 - -
Chy04g00082 272 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 271 - -
Chy04g00082 272 ProSiteProfiles PPC domain profile profile. 87 224 IPR005175 -
Chy04g00082 272 MobiDBLite consensus disorder prediction 32 46 - -
Chy04g00082 272 PIRSF ESCAROLA 10 270 IPR014476 GO:0003680
Chy04g00082 272 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 271 IPR014476 GO:0003680
Chy04g00082 272 MobiDBLite consensus disorder prediction 21 80 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy04g00082 Chy06g02135 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00082 Chy-Chr4:850886 Chy11g01953 Chy-Chr11:25567509 1.71E-91 dispersed
Chy04g00082 Chy-Chr4:850886 Chy06g02135 Chy-Chr6:25683354 8.58E-90 wgd
Chy04g00082 Chy-Chr4:850886 Chy06g00280 Chy-Chr6:1884621 8.38E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00082 - - cmo:103503535 452.21