Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00085 ATGGATTCACTTGATACTCCCCCTCCCCCACTTTCTGCACCCTCCAACATGGCCGTCGGAGGACAACCCGCGTATTCACCCGCCAACAACAATGCCTCCTCCACGATTGCTCTCAATCAACCTTCAGCTCAAATGATCCCCCCTTCATCCCGATTTCCCTTTAACCACCCTGTGATCCCACCTTCATCCGTATCTTTGGATTCTCTCAACGTTTCTCCTTACGACGGATCGCATTCCGCTAATTTCAACGTTGATTCCGGTAAGAAAAGGAGAGGCCGCCCCAGGAAGTACGCTCCTGATGCTAACAACATTGCCTTGGGTTTGGCTCCTACACCCACTGTTGCCTCTTCTCTTCCTCACGGAGATTTGACCGCTACTCCTGATTCGGAACAACCCGCCAGGAAAACCAGAGGAAGGCCACCGGGGTTCAGGTGGAACTGGTTTTACTCCTCATGTCTTATTGGCGAAGCCTGGAGAGGCTTAGTATATTTGCATAAAGAAATGATTTTAAGTACATTGTTCTCAAAAGTTGAGACTCATTGGTCGAAATATGGGTTCCTTGCTATATGGTTGCAGGATGTAGCAGCCAAAATTTTGTCCTTCTCACAGCAAGGACCACGAACGGTCTTCATTCTCTCTGCAAATGGTACTCTCAGTAATGCTACCCTTCGACACTCAGCATCGTCTGGTGGTTCTGTGTCATATGAGGGGCACTATGATATTATCTCTCTGTCAGGCTCGTTTTTGCTGTCAGAGAATAATGGAACTCGAAGTAGAACAGGTGGTTTGAGTGTGCTACTGGCTGGATCAAATGGACAGGTTCTTGGTGGTGGAGTTGCGGGAATGTTAATGGCAAGTTCTCAAGTACAGGTGATTGTGGGAAGTTTTCTAGAGGATGATAAAAAATCCAACACAAGTATGCTGAACTCTGGATCTTCATCTGCACCATCACAAATGATAAACTTTGGTGGTGGTGGTGGTGGTGGGCTAGCAGCAGCAGCAGCTAGCCCTCCGTCGTTAGGGGGATCGAGTGGGGAGTCGTCTGGTGAAAATGGAGATAGCCCTCTTAATAATAGGCATCCTGGAATGTTCAATAATTCTAGCCAGCCAATCCACAATCTTCAGATGTACCAATTATGGGCAGGCCAAACACAGCAGTGA 1161 47.89 MDSLDTPPPPLSAPSNMAVGGQPAYSPANNNASSTIALNQPSAQMIPPSSRFPFNHPVIPPSSVSLDSLNVSPYDGSHSANFNVDSGKKRRGRPRKYAPDANNIALGLAPTPTVASSLPHGDLTATPDSEQPARKTRGRPPGFRWNWFYSSCLIGEAWRGLVYLHKEMILSTLFSKVETHWSKYGFLAIWLQDVAAKILSFSQQGPRTVFILSANGTLSNATLRHSASSGGSVSYEGHYDIISLSGSFLLSENNGTRSRTGGLSVLLAGSNGQVLGGGVAGMLMASSQVQVIVGSFLEDDKKSNTSMLNSGSSSAPSQMINFGGGGGGGLAAAAASPPSLGGSSGESSGENGDSPLNNRHPGMFNNSSQPIHNLQMYQLWAGQTQQ* 387
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 857773 861138 - Chy4G068030.1 Chy04g00085 223984
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00085 386 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 47 355 IPR039605 GO:0003680
Chy04g00085 386 MobiDBLite consensus disorder prediction 331 368 - -
Chy04g00085 386 MobiDBLite consensus disorder prediction 22 49 - -
Chy04g00085 386 Pfam Plants and Prokaryotes Conserved (PCC) domain 192 296 IPR005175 -
Chy04g00085 386 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 47 355 - -
Chy04g00085 386 ProSiteProfiles PPC domain profile profile. 177 318 IPR005175 -
Chy04g00085 386 Gene3D - 192 310 - -
Chy04g00085 386 MobiDBLite consensus disorder prediction 77 98 - -
Chy04g00085 386 MobiDBLite consensus disorder prediction 340 368 - -
Chy04g00085 386 SUPERFAMILY AF0104/ALDC/Ptd012-like 192 298 - -
Chy04g00085 386 MobiDBLite consensus disorder prediction 1 54 - -
Chy04g00085 386 CDD DUF296 192 296 IPR005175 -
Chy04g00085 386 MobiDBLite consensus disorder prediction 117 138 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Chy04g00085 Chy06g02136 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00085 Chy-Chr4:857773 Chy03g01005 Chy-Chr3:13564868 1.11E-44 dispersed
Chy04g00085 Chy-Chr4:857773 Chy06g02136 Chy-Chr6:25703791 1.12E-89 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00085 - - csv:101205370 597.816