Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy04g00093 | ATGAATCTCTGGGCGGATGAGAACGCTTCCATGATGGATGTTTTCATCAACCCCGATCTGAGTTCTTTCTGGGTTACACCGCCACAGTCACAGCAACTCCCTCAGCCATCTTATTCCACGCCCACTGACCCTAGTAAAGCCCTTGGTCAAACACCACCACCGCCGCCCCCGTCGTCCATGCCGCTTTTTAACCAAGAGACTCTTATGCAGCGTCTTCAAACATTGATTGAAGGTGCTCAAGAGAACTGGACTTATGCTATTTTCTGGCAGTCTTCCTATGATTATTCCGGCGCTACTGTCTTGGGGTGGGGAGATGGGTATTATAAAGGTGAGGAAGATAAAGGGAAAGAGAAAGCTAAATCCAGTAGTTCGATAGCAGAGCAAGAGCATCGGAAGAAGGTACTTCGTGAGCTTAACTCTCTCATTTCTGGTTCTCCTACCTCTGAAGCCGACGCCGTTGATGAGATTGTTACCGACACCGAGTGGTTTTACTTGGTGTCGATGACTCAATCATTTATCTCCGGTGTTGGATTGCCGGGGCAGGCGTTTTTCGATTCCAATCCTATTTGGGTTGCTGGTTCGGATCGGCTTGCGAGCTCCTTCTGTGAACGAGCTCGTCAGGGTCAGGTTTTCGGGTTACAGACTATGGTTTGTATACCGTCGGCGAATGGAGTTGTTGAATTGGGTTCGAGTGAGTTGATTTTACAGAGCTCCGATCTGATGAATAAGGTTAGGGTTTTGTTTAATTTCAACAATCTGGAAGTGGAAACTTGGCCAATTAGTGGTGTTGACCAAGGGGAGAATGATCCTTCTTCGCTTTGGATTAGTGAACCATCTTCAAACGCCATTGAAATTGCGAATCCTGTTCCTTCTGCTTCAGCTCCAACTCCAAGCACAACAAACAGCCAACCCATTTCCAAAATTACAACAGAGACGATCGAGAATCCCAATAAATCTAGTGTTGTAGTTGAAACTCCAAGTTCTTCTGTTCCTCCTCCTTCTCAGAAAACTCATCGACAGTCTCAGCCGATTCAAACACAGAGCTTCTTCACCAACAGGGAATTGAATTTCTCTGAATTTGGGTATGAGAATGGTCGATTGAAGGAAGGGAATTCCACTTCGTTGAAGCCGGAATCCGGTGAGATTCTGAATTTTGGGGAGAGTAAGAGGAGTAGTTCTTATCCCAAGACAGATAACAACTTACCTTCAGCGAATTCCTTATTTGGAGGGGATGAGAATAAGAAGAAGAGATCCCCAACTTCACGTGGGAGTAACGAAGAAGGGATGCTTTCTTTTACTTCTGGTGTGATTCTTCCTTCCTCTGGAGGTGTGAAATCGGGTGTTTGCGCTGGCGATTCCGATCACTCCGATCTTGAAGCTTCAGTGATTCGTGAGGTGGAGAGTAGTAGAGTGGTGGAGCAGGAGAAACGGCCTCGAAAAAGAGGGCGAAAGCCAGCAAATGGTAGAGAAGAACCATTGAATCATGTTGAAGCAGAGAGGCAAAGGAGAGAAAAGCTTAACCAAAGATTCTACGCTCTTCGAGCTGTTGTTCCAAACGTATCGAAAATGGATAAAGCTTCACTCCTTGGTGATGCTATCTCTTACATCAATGAACTTAGAGGGAAGCTTCAAACTGCTGAATCAGATAAGGAAGATCTACAGAAGCAATTGGATTCAGTGAAGAAGATGATGATGTCCTCTTCCAGTAAAGATTCATGCATGTCAAGCTCAAATCAACCCCCACCAGATCAAGACATAAAATCATCAAACATAAACCATAATGATATCGAAACCGATATCGATGTAAAGATCATCAGTTGGGATGCAATGATCCGAATCCAATCAAGTAAGAAAAACCATCCTGCTGCACGGCTGATGGCAGCTCTTGAGGAACTTGACTTGGATATAAACCACGCGAGCATCTCGGTTGTCAATGATCTCATGATCCAACAAGCAACCGTGAAGATGGGGAGTCGGCTATACACTCAAGAGCAGTTAAGGATAGCATTATCGTCGAAAATAGGCGCAAGTACTCGGTAG | 2040 | 45.25 | MNLWADENASMMDVFINPDLSSFWVTPPQSQQLPQPSYSTPTDPSKALGQTPPPPPPSSMPLFNQETLMQRLQTLIEGAQENWTYAIFWQSSYDYSGATVLGWGDGYYKGEEDKGKEKAKSSSSIAEQEHRKKVLRELNSLISGSPTSEADAVDEIVTDTEWFYLVSMTQSFISGVGLPGQAFFDSNPIWVAGSDRLASSFCERARQGQVFGLQTMVCIPSANGVVELGSSELILQSSDLMNKVRVLFNFNNLEVETWPISGVDQGENDPSSLWISEPSSNAIEIANPVPSASAPTPSTTNSQPISKITTETIENPNKSSVVVETPSSSVPPPSQKTHRQSQPIQTQSFFTNRELNFSEFGYENGRLKEGNSTSLKPESGEILNFGESKRSSSYPKTDNNLPSANSLFGGDENKKKRSPTSRGSNEEGMLSFTSGVILPSSGGVKSGVCAGDSDHSDLEASVIREVESSRVVEQEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLQTAESDKEDLQKQLDSVKKMMMSSSSKDSCMSSSNQPPPDQDIKSSNINHNDIETDIDVKIISWDAMIRIQSSKKNHPAARLMAALEELDLDINHASISVVNDLMIQQATVKMGSRLYTQEQLRIALSSKIGASTR* | 680 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 902982 | 905021 | - | Chy4G068110.1 | Chy04g00093 | 223992 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy04g00093 | 679 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 490 | 539 | IPR011598 | GO:0046983 | |
| Chy04g00093 | 679 | SMART | finulus | 496 | 545 | IPR011598 | GO:0046983 | |
| Chy04g00093 | 679 | Gene3D | - | 489 | 567 | IPR036638 | GO:0046983 | |
| Chy04g00093 | 679 | Coils | Coil | 536 | 563 | - | - | |
| Chy04g00093 | 679 | CDD | bHLH_AtAIB_like | 487 | 558 | - | - | |
| Chy04g00093 | 679 | MobiDBLite | consensus disorder prediction | 385 | 428 | - | - | |
| Chy04g00093 | 679 | MobiDBLite | consensus disorder prediction | 26 | 46 | - | - | |
| Chy04g00093 | 679 | MobiDBLite | consensus disorder prediction | 561 | 592 | - | - | |
| Chy04g00093 | 679 | Pfam | Helix-loop-helix DNA-binding domain | 494 | 539 | IPR011598 | GO:0046983 | |
| Chy04g00093 | 679 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 493 | 565 | IPR036638 | GO:0046983 | |
| Chy04g00093 | 679 | MobiDBLite | consensus disorder prediction | 47 | 61 | - | - | |
| Chy04g00093 | 679 | MobiDBLite | consensus disorder prediction | 561 | 589 | - | - | |
| Chy04g00093 | 679 | MobiDBLite | consensus disorder prediction | 287 | 349 | - | - | |
| Chy04g00093 | 679 | PANTHER | TRANSCRIPTION FACTOR MYC2 | 5 | 675 | - | - | |
| Chy04g00093 | 679 | MobiDBLite | consensus disorder prediction | 467 | 500 | - | - | |
| Chy04g00093 | 679 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 68 | 248 | IPR025610 | - | |
| Chy04g00093 | 679 | PANTHER | MYC | 5 | 675 | IPR045084 | GO:0003700|GO:0006355 | |
| Chy04g00093 | 679 | MobiDBLite | consensus disorder prediction | 385 | 407 | - | - | |
| Chy04g00093 | 679 | MobiDBLite | consensus disorder prediction | 26 | 62 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Chy04g00093 | Chy06g02143 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy04g00093 | Chy-Chr4:902982 | Chy11g01724 | Chy-Chr11:23669055 | 2.84E-25 | dispersed | |
| Chy05g00459 | Chy-Chr5:4980586 | Chy04g00093 | Chy-Chr4:902982 | 1.93E-07 | transposed | |
| Chy06g02223 | Chy-Chr6:26401561 | Chy04g00093 | Chy-Chr4:902982 | 8.25E-21 | transposed | |
| Chy11g01641 | Chy-Chr11:22912429 | Chy04g00093 | Chy-Chr4:902982 | 9.30E-23 | transposed | |
| Chy04g00093 | Chy-Chr4:902982 | Chy06g02143 | Chy-Chr6:25749137 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 17785 | PF14215 | bHLH-MYC_N | 1.20E-54 | CL0161 | Chy | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy04g00093 | K13422 | - | csv:101218165 | 1204.89 |