Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00102 ATGGGGTCAGGGTCAGGGTCATATGGCAACCCTAAAACTTGGATACCATATATGAGCAACAAAGATTGCTCTCAAGGTTTCTGCAGTGTATATTGTCCTCAATGGTGCTATATCATGTTTTCACCTCCACCACCCTTGGAGTTTCCAGATGATAATTCAGGCCCAAATTTTTCACCTCTTGTTATTGCAATTATTGGAATTCTGGCCAGTGCTTTCCTTCTTGTAACCTATTACACCATTATTTCAAAGTATTGTGGCAACACAAATCGTTTGTCTGGAACTGGAAGTCATGACCCAAGTGAGGAATATGAAGGTAATCACAACCCAACACTTCATGAGCCATGGCATGTTGCCACAACTGGCTTGGATGAAGCACTTATCAAGTCCATTACTGTTTGCAAGTACAAGAGAGGAGATGGGTTGGTTGAAGGCTCTGATTGCTCCGTTTGCCTTAGTGAGTTTCAAGAAGATGAAAGCCTTCGATTGTTGCCTAAATGCAGCCATGCTTTTCATCTTCAATGCGTTGATACATGGCTCAAATCACACTCCAATTGTCCCTTATGTCGTGCTAATATCATCTCTATCAATGCTGGTTCTCCAGTTCAACTCCCTGCAAGCACTGCATATCCCATAACTAATGAGACCGTGCCAGAGACTTCTCAGGATAATGACCATGAGGCTGTTTCACTAGATTCTGGACAAAGTTTTAGCAATGAGGATGCAAAGAACTCGGTTCGCGCTTTCAGCGACCTTGGAAATCTGGAGAAAATAGATACTATCATTGAGCTTAGAGATGGAAGATTGCAGCATATTAGAAGGTCAATTTCAATGGATCATTGCAGCCAAAACCATATTATTATTGCAGATGTTCTACGTCTAAATGAAGATGATGTTGGAGGTATTGATGAAGCAGGAAGTTCAGGTGATGTCGGATCATCTAAACATTCTGTAGGAGAAGACAGTAGGTCAAGTCATAGAAAAAGAATCTTGCATTGCGTGATGAGTCCTGTTTCAATGAAGAGATCATTTTCAAGTGGAAGACTTTCTCTCACCAAGCATGGGAGAGAGCACAGGGGAATTGCCCCTGTCTCAAATTTTACAACACAGAATCAGAATGATTTGCAGTTTTGA 1131 41.56 MGSGSGSYGNPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPPPLEFPDDNSGPNFSPLVIAIIGILASAFLLVTYYTIISKYCGNTNRLSGTGSHDPSEEYEGNHNPTLHEPWHVATTGLDEALIKSITVCKYKRGDGLVEGSDCSVCLSEFQEDESLRLLPKCSHAFHLQCVDTWLKSHSNCPLCRANIISINAGSPVQLPASTAYPITNETVPETSQDNDHEAVSLDSGQSFSNEDAKNSVRAFSDLGNLEKIDTIIELRDGRLQHIRRSISMDHCSQNHIIIADVLRLNEDDVGGIDEAGSSGDVGSSKHSVGEDSRSSHRKRILHCVMSPVSMKRSFSSGRLSLTKHGREHRGIAPVSNFTTQNQNDLQF* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 969680 970810 + Chy4G068200.1 Chy04g00102 224001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00102 376 SUPERFAMILY RING/U-box 141 195 - -
Chy04g00102 376 MobiDBLite consensus disorder prediction 362 376 - -
Chy04g00102 376 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 270 356 IPR044675 -
Chy04g00102 376 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 9 227 IPR044675 -
Chy04g00102 376 MobiDBLite consensus disorder prediction 352 376 - -
Chy04g00102 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 196 IPR013083 -
Chy04g00102 376 SMART ring_2 147 188 IPR001841 -
Chy04g00102 376 MobiDBLite consensus disorder prediction 302 326 - -
Chy04g00102 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE 270 356 - -
Chy04g00102 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE 9 227 - -
Chy04g00102 376 CDD RING-H2_EL5_like 146 189 - -
Chy04g00102 376 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Chy04g00102 376 MobiDBLite consensus disorder prediction 216 238 - -
Chy04g00102 376 Pfam Ring finger domain 146 189 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00102 - - - cmo:103503554 746.888
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00202 Chy-Chr1:1388258 Chy04g00102 Chy-Chr4:969680 3.93E-51 dispersed
Chy02g00737 Chy-Chr2:4541780 Chy04g00102 Chy-Chr4:969680 6.90E-42 dispersed
Chy02g01257 Chy-Chr2:9188097 Chy04g00102 Chy-Chr4:969680 2.15E-21 dispersed
Chy04g00102 Chy-Chr4:969680 Chy06g00331 Chy-Chr6:2210408 1.89E-79 dispersed
Chy10g00920 Chy-Chr10:14863862 Chy04g00102 Chy-Chr4:969680 3.64E-27 dispersed
Chy11g01272 Chy-Chr11:18932987 Chy04g00102 Chy-Chr4:969680 1.00E-26 dispersed
Chy12g00192 Chy-Chr12:2358417 Chy04g00102 Chy-Chr4:969680 1.84E-10 dispersed
Chy12g01285 Chy-Chr12:17352743 Chy04g00102 Chy-Chr4:969680 4.70E-25 dispersed
Chy04g00102 Chy-Chr4:969680 Chy03g01343 Chy-Chr3:16398072 3.98E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g679 . . . . . . . Bma14g00158 . . Cma02g01617 . Car02g01377 . . . Cpe05g00173 . . . . . . . . . . . . . . . . . . . . Chy04g00102 . . . Bda07g00092 . . Bpe11g00330 . . Sed02g1537 Cmo02g01662 Cmo19g00246 . . . . . Cpe15g00207 Bhi05g00484 Tan07g1986 Cmetu04g2051 Lac11g2423 Hepe06g1781 . Lcy12g1954 . . . . . . . . Csa03g04600 . Cme04g00127
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001850 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00102 Chy_Chr04 FPKM 5.712302 6.284206 1.857155 1.209641 15.856591 16.29356 17.306952 0.674021 0.702317 0.663822