Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00104 ATGAGTCTTGATGCTCTTTCTTCCAATGACTTGTTCAACTTCATCATCTACGACACGATCTCCGCAACGCCCAACACCTCCAATAACAACGTCGTCCCTCACCATGACTCCTCGGAGAACACTTTCCTATCCGACGACAAGTGCTCGAAACCCAATTCGCTAAAACGCTGCTCGAGTGAGGTAGAGATTAGCAACCGAGTGGTGGTGCCATTGTCGACTACGACGACTACGACGACCACCACGCAACATGGGAAGAAGAAAAGAAAGAGAAAAGCAAAGGTTTGTAAGAATAAAGAAGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGCCGTAAACAAATGAATGAACATCTTTCGGTTTTACGTTCACTCATGCCAGAATCCTATGTTCAAAGGGGTGACCAAGCCTCCATAGTAGGTGGTGCCGTTGAGTTTGTGAAGGAATTGGAGCATCTTCTGTCAACTTTAGAAGCCAAGAAGCTACAAATCTTACAACAAGAAGTAGATCAACATCAAGAACAAGAGATGAATGAAGATTCAAGGATAAGAAAAAATGATAATAATGATAATAACAATAAGTTGTTTTCATTTGCAAGTTTATTGATGAATAGTTCAGATCAAAATAACTATTCATCACAATATTCAACAAAATACACATCAAAATCCAAAGCCTCTTCAGCTGATATTGAAGTCACTTTGATTGAAACTCATGCAAATCTTAGAATCCTCTCAACAAGAAGCCATAGACAACTCTTGAAGCTCATTGCTGGTTTGCAAGCTCTTCGTCTCACTATTCTTCATCTAAATCTCACTGATTTTCATCCATTGGTTCTTTACTCCATTAGCCTCAAGGTTGAAGAAGGATGCCAACTAAGATCAGTAGATGACATAGCAGCAGCAGCACATCATATGGTAAGAATAATTGAGGAAGAAGCCGTTTTATGTTAA 963 39.77 MSLDALSSNDLFNFIIYDTISATPNTSNNNVVPHHDSSENTFLSDDKCSKPNSLKRCSSEVEISNRVVVPLSTTTTTTTTTQHGKKKRKRKAKVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKLQILQQEVDQHQEQEMNEDSRIRKNDNNDNNNKLFSFASLLMNSSDQNNYSSQYSTKYTSKSKASSADIEVTLIETHANLRILSTRSHRQLLKLIAGLQALRLTILHLNLTDFHPLVLYSISLKVEEGCQLRSVDDIAAAAHHMVRIIEEEAVLC* 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 972765 975534 - Chy4G068220.1 Chy04g00104 224003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00104 320 Pfam Helix-loop-helix DNA-binding domain 104 155 IPR011598 GO:0046983
Chy04g00104 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 102 171 IPR036638 GO:0046983
Chy04g00104 320 PANTHER TRANSCRIPTION FACTOR BHLH71 1 319 - -
Chy04g00104 320 Gene3D - 93 189 IPR036638 GO:0046983
Chy04g00104 320 SMART finulus 109 160 IPR011598 GO:0046983
Chy04g00104 320 Coils Coil 151 186 - -
Chy04g00104 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 103 154 IPR011598 GO:0046983
Chy04g00104 320 PANTHER MAX DIMERIZATION, MAD 1 319 - -
Chy04g00104 320 MobiDBLite consensus disorder prediction 74 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00104 Chy-Chr4:972765 Chy05g01131 Chy-Chr5:15809475 1.09E-59 dispersed
Chy04g00104 Chy-Chr4:972765 Chy06g02143 Chy-Chr6:25749137 3.72E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17787 PF00010 HLH 1.10E-10 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00104 - - csv:101210413 537.724