Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00114 ATGAGAAAGTCCGGAAGAGGAGGCCGGTGGACTGATCACAATCGAAACCAAGAGGTTTGGGTCGCCAAACACACCAATCAATCACACAATCACGCTTCTACTTCCGCCTCACAACCCTCCCACCTCTCTAATCCTCCTCCTACCGCTCGTAATTTCAATTACGAGCATCGCATTAACCGCCGTCCCCGTCCTCACCCTGTCCACAAACCGGAGGTCACTGCTTTGGCCGATGGAATTGAGTCTTTCTCTTTCGACGAAAAGCCTGTGGACTTCGATGTTGCGAAACCTAACTGTGAGGTTAAACAACAGACACCTGGAAATTCTTCCTCAACTGAGGCTGCGGATGTTGTTTATAGTAGGTTAGAGATGCTGCAGCGGAGTTCCGAGGAGCCGGACTTGTCGGAGGAGCAGCTCAGTATTAATAATCAGTTGCAGGAAGATGAGTTGCTGGCTTTGGAGTCCATATATGGAGAAAATGTCTATATCCTCGATGAATATAAAGGGCAGCGCCGTTTCCAGATTTTCATACACATTGAGAATCCTGGCGATATTACTATAACTGCAAAGCTTAATTCATCCAGTTCCCTTGAGATCAAAAGTCCTAATTCAGATGAATTCTCCTGTTCTTTCGATGTGAAGTACCTTAACCCCATTGTTTTGACCTGTTTATTACCAAAAGTGTATCCTAGTCATCTACCTCCATATTATACAATCTCTATTCGGTGGTTGGACTCTGCTAGAATTTCTAGGCTTTGCTCTGTGTTGGATGGGATATGGAGTGAACAAGTGGGGCAGGAAGTTGTATATCAATGGGTAGAATGGCTACAAATGTCATCTCTGGCTTATCTTCAGTCAGATAAAGAGATTATGCTTGGTCCTTACGATAAGGGACATTCAGGAGATACTCGGGCAGTTTCAGGAATTGTTTCTCCAGAAGTTGATGTTCCTGCTATTATAAATTATGACATTCAGAGACGTGATGAGGACTTCTGCATGAATTTGCAAGAGTGCTGCATCTGTCTAAGTCAGTATGCAGGTGCAAAGTTTGTAGATTGCCATGTAAACATTACTTTTGCTGGAAGTGCATGGAGACATACTCGAGCATGCATGTCAAGGAAGGCACAGTAA 1128 44.33 MRKSGRGGRWTDHNRNQEVWVAKHTNQSHNHASTSASQPSHLSNPPPTARNFNYEHRINRRPRPHPVHKPEVTALADGIESFSFDEKPVDFDVAKPNCEVKQQTPGNSSSTEAADVVYSRLEMLQRSSEEPDLSEEQLSINNQLQEDELLALESIYGENVYILDEYKGQRRFQIFIHIENPGDITITAKLNSSSSLEIKSPNSDEFSCSFDVKYLNPIVLTCLLPKVYPSHLPPYYTISIRWLDSARISRLCSVLDGIWSEQVGQEVVYQWVEWLQMSSLAYLQSDKEIMLGPYDKGHSGDTRAVSGIVSPEVDVPAIINYDIQRRDEDFCMNLQECCICLSQYAGAKFVDCHVNITFAGSAWRHTRACMSRKAQ* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1035320 1037361 + Chy4G068320.1 Chy04g00114 224013

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00114 375 MobiDBLite consensus disorder prediction 1 19 - -
Chy04g00114 375 MobiDBLite consensus disorder prediction 1 52 - -
Chy04g00114 375 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 104 353 IPR031127 GO:0004842|GO:0016567
Chy04g00114 375 Pfam RWD domain 143 277 IPR006575 GO:0005515
Chy04g00114 375 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 104 353 - -
Chy04g00114 375 ProSiteProfiles RWD domain profile. 147 282 IPR006575 GO:0005515
Chy04g00114 375 MobiDBLite consensus disorder prediction 20 50 - -
Chy04g00114 375 SMART RWD2001b 147 282 IPR006575 GO:0005515
Chy04g00114 375 Gene3D Ubiquitin Conjugating Enzyme 133 287 IPR016135 -
Chy04g00114 375 SUPERFAMILY UBC-like 141 276 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00114 K11971 RNF14, ARA54; E3 ubiquitin-protein ligase RNF14 [EC:2.3.2.31] - csv:101211646 689.108
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g699 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00114 . Blo03g00874 . Bda07g00086 . . Bpe11g00323 . . Sed01g4129 . Cmo19g00236 . . . . . Cpe15g00198 Bhi05g00464 Tan07g2001 Cmetu04g1279 Lac11g2439 Hepe06g1792 . Lcy12g1964 Cla09g01103 Cam09g1156 Cec09g1165 Cco09g1180 . . Cre09g1118 . Csa03g04588 . Cme04g00137
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011677 1 1 1 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00114 Chy_Chr04 FPKM 9.437696 8.746945 22.050756 20.87726 31.422644 34.029816 33.020439 15.729702 15.652362 15.905154