Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00119 ATGTATGGGGATTGCCAAGTGATGTCAAGCAATATGGGAGGAAATATGGTTTCCACTGAATCTCTCTTTTCTTCTCCAATTCAAAACCCTAATTTCAATTTCATCTCCAATTTTCAACACTTTCCTTCCATTGTACCGAAGGAAGAAAATGGGTTGATGATGAGAGGAGGGAAAGAAGACATGGAAAGTGGGTCTGGAAGTGAACAACTTGTTGAAGAAAATCAAGGAATTGAAATGGAAAGTAATATTAATAATAATGATAGTATTACTCAACAAAATCAGAAGAAAAAACGCTATCACAGACATACTGCTCGCCAGATCCAAGAAATGGAAGCGTTATTTAAGGAATGTCCACACCCAGATGACAAGCAAAGGCTAAAACTCAGCCAAGAACTTGGCCTCAAACCTCGCCAAGTTAAATTTTGGTTCCAAAATCGTAGAACCCAAATGAAGGCACAACAAGATAGATCCGATAACGTGATACTTAGGGCAGAAAATGAGACATTAAAGAATGAGAATTATAGATTACAAAGTGCCCTAAGAAACATAATATGCCCTAGCTGTGGAGGGCAGGGTATCCTTGGTGAACCAAGCTTGGATGAACAACAGCTTCGTCTTGAGAATGCTAGACTTAGAGATCAGTTAGAACAAGTTTGCTCTATGACCACAAGATACACTGGCCGCCCAATCCAAGCAATGGCCTCCCCAGCTCCTCCTATTATGCAACCATCTTTGGATTTGGACATGAACATATACTCAAGACAATACACTGAGGCCATGGTTCCGTCTTCTGAAATGATGGCGTTGCCCTCGATGCTCCCACCTGAGGCCGCCCACTTCCCAGAAGGCGGCCTATTAATTGAGGAGGAGAAAACACTTGCAATGGACCTTGCTGTTTCATCCATAGCTGAACTTGTGAAGATGTGTCGCTTGACCGAGCCTCTTTGGGTTCGAGACAATGAGAGCGGTAAGGAAGTTCTAAATGTTGAAGAGCATGGGAGGATGTTTCCATGGCCATTGAACCTCAAGCAACACTTGATCAATGAGTTTAGGACCGAAGCAACACGTGATAGCGCAGTTGTTATAATGAATAGCATCACTCTTGTTGACGCCTTTCTCGATGCTAACAAATGGATGGAATTGTTTCCTTCAATTGTGGCCAAAGCGAAGACTGTGCAAGTCATTTCATCAAGTGTTTCAGGCCATGCTTCTTCTTCACTTCAGCTGATGTATGCAGAACTTCAGACACTTTCTCCTCTAGTTCCTACGAGAGAAGCACATTTTCTCCGGTGCTGCCAACAGAATGCCGACGAAGGAAGCTGGACCGTCGTTGATTTTCCAATCGATAGCTTCCATGACAGTCTTCAACACTCATTTCCCAGATACAGAAGAAAGCCCTCTGGCTGTATTATTCAAGACATGCCCAATGGATATTCTAGGGTTACATGGGTGGAGCATGCAGAGATAGAAGAGAAGCCAATCCATCAAATATTCAATCATTTTGTGCACAGTGGAATGGCTTTTGGGGCACATCGTTGGTTGGCCATTTTACAAAGACAATGTGAGAGAATTGCAAGTCTCATGGCTAGAAATATTTCTGACCTTGGAGTAATACCTTCACCAGAAGCAAGACAAAACCTAATGAAACTGGCACAAAGAATGATCAGAACTTTCTCTGTCAACATAAGTACCTCCGGTGGGCAGTCGTGGACAGCGTTATCGGATTCTCCCGAGGATACTGTTCGTATAACCACTCGAAAAGTTGTCGAGCCTGGCCAACCCAATGGGGTTATTCTTAGCGCTGTCTCCACTAATTGGCTTCCTTATCCTCATTATCGAGTCTTCGATCTTCTACGAGACGAACGACGACGTTCTCAGCTGGAGGTTCTTTCGAATGGGAATTCCTTACATGAAGTTGCTCACATTGCTAATGGCTCTCACCCTGGAAATTGCATCTCCCTTCTTCGTATCAATGTGGCCAGCAACTCCTCCCAACATGTTGAGCTGATGCTGCAGGAGAGTTGCACAGACCAATCTGGCAGTCTCGTTGTCTACGCCACAATTGACGTTGATTCAATTCAATTAGCAATGAGCGGAGAAGACCCCTCCTGCATTCCCCTCCTCCCCATAGGATTTTCCATCGTCCCCATCATCGGGTCAACCGTCGACGGACATCCAGCACCCCCACCCGAGGATGGTACTCCAAATCCCAACTCTGGTTGCCTCCTTACCGTTGGCTTACAAGTTCTAGCCAGCACCATCCCATCCGCGAAGCTCAACTTATCAAGTGTAACTGCCATCAACAACCACCTCTGTAACACGGTGCACCAAATCAACATTGCTCTCGGCGGCCCAGGTCGTTTGGAGAACGACAACGTGGTGGCTGAGCCGAATAATCCACCGACACCACCGCCGCCGCCACCCGCATCCAAGCAATAA 2439 45.51 MYGDCQVMSSNMGGNMVSTESLFSSPIQNPNFNFISNFQHFPSIVPKEENGLMMRGGKEDMESGSGSEQLVEENQGIEMESNINNNDSITQQNQKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENETLKNENYRLQSALRNIICPSCGGQGILGEPSLDEQQLRLENARLRDQLEQVCSMTTRYTGRPIQAMASPAPPIMQPSLDLDMNIYSRQYTEAMVPSSEMMALPSMLPPEAAHFPEGGLLIEEEKTLAMDLAVSSIAELVKMCRLTEPLWVRDNESGKEVLNVEEHGRMFPWPLNLKQHLINEFRTEATRDSAVVIMNSITLVDAFLDANKWMELFPSIVAKAKTVQVISSSVSGHASSSLQLMYAELQTLSPLVPTREAHFLRCCQQNADEGSWTVVDFPIDSFHDSLQHSFPRYRRKPSGCIIQDMPNGYSRVTWVEHAEIEEKPIHQIFNHFVHSGMAFGAHRWLAILQRQCERIASLMARNISDLGVIPSPEARQNLMKLAQRMIRTFSVNISTSGGQSWTALSDSPEDTVRITTRKVVEPGQPNGVILSAVSTNWLPYPHYRVFDLLRDERRRSQLEVLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQHVELMLQESCTDQSGSLVVYATIDVDSIQLAMSGEDPSCIPLLPIGFSIVPIIGSTVDGHPAPPPEDGTPNPNSGCLLTVGLQVLASTIPSAKLNLSSVTAINNHLCNTVHQINIALGGPGRLENDNVVAEPNNPPTPPPPPPASKQ* 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1065219 1071005 + Chy4G068370.1 Chy04g00119 224018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00119 812 Gene3D - 80 164 - -
Chy04g00119 812 CDD START_ArGLABRA2_like 291 522 - -
Chy04g00119 812 SMART HOX_1 94 157 IPR001356 GO:0003677
Chy04g00119 812 PANTHER - 53 788 - -
Chy04g00119 812 SUPERFAMILY Homeodomain-like 84 154 IPR009057 -
Chy04g00119 812 MobiDBLite consensus disorder prediction 797 812 - -
Chy04g00119 812 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 53 788 IPR042160 -
Chy04g00119 812 SUPERFAMILY Bet v1-like 560 778 - -
Chy04g00119 812 Pfam START domain 298 523 IPR002913 GO:0008289
Chy04g00119 812 ProSiteProfiles START domain profile. 287 526 IPR002913 GO:0008289
Chy04g00119 812 MobiDBLite consensus disorder prediction 789 812 - -
Chy04g00119 812 Gene3D - 341 521 IPR023393 -
Chy04g00119 812 Coils Coil 152 172 - -
Chy04g00119 812 Pfam Homeodomain 96 151 IPR001356 GO:0003677
Chy04g00119 812 SMART START_1 296 523 IPR002913 GO:0008289
Chy04g00119 812 CDD homeodomain 96 154 IPR001356 GO:0003677
Chy04g00119 812 ProSitePatterns 'Homeobox' domain signature. 128 151 IPR017970 GO:0000981|GO:0006355
Chy04g00119 812 SUPERFAMILY Bet v1-like 289 525 - -
Chy04g00119 812 ProSiteProfiles 'Homeobox' domain profile. 93 153 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00119 Chy-Chr4:1065219 Chy12g01582 Chy-Chr12:19332505 0 dispersed
Chy12g00001 Chy-Chr12:15356 Chy04g00119 Chy-Chr4:1065219 2.28E-31 dispersed
Chy04g00119 Chy-Chr4:1065219 Chy11g02014 Chy-Chr11:25991815 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17790 PF01852 START 1.30E-43 CL0209 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00119 - - csv:101212772 1584.31